Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   APQ97_RS04120 Genome accession   NZ_CP012911
Coordinates   847427..851080 (+) Length   1217 a.a.
NCBI ID   WP_002935480.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 842427..856080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS12640 - 842791..843870 (+) 1080 Protein_780 MucBP domain-containing protein -
  APQ97_RS04115 (APQ97_04105) rexB 844161..847427 (+) 3267 WP_002935479.1 ATP-dependent nuclease subunit B Machinery gene
  APQ97_RS04120 (APQ97_04110) rexA 847427..851080 (+) 3654 WP_002935480.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  APQ97_RS04125 (APQ97_04115) plsY 851090..851734 (-) 645 WP_024394247.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  APQ97_RS04130 (APQ97_04120) parE 851877..853826 (+) 1950 WP_053866396.1 DNA topoisomerase IV subunit B -
  APQ97_RS04135 (APQ97_04125) - 853850..854452 (+) 603 WP_002935485.1 Fic family protein -
  APQ97_RS04140 (APQ97_04130) - 854485..854979 (+) 495 WP_002935487.1 YkvA family protein -
  APQ97_RS04145 (APQ97_04135) - 854982..855434 (+) 453 WP_002935488.1 hypothetical protein -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139686.11 Da        Isoelectric Point: 5.0587

>NTDB_id=137388 APQ97_RS04120 WP_002935480.1 847427..851080(+) (rexA) [Streptococcus suis strain NSUI060]
MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETMDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEQDENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIELILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENVDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQADSQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAFAKMHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIVMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQDNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=137388 APQ97_RS04120 WP_002935480.1 847427..851080(+) (rexA) [Streptococcus suis strain NSUI060]
ATGGCTTTTGAACAATTTTTAAGCGCAGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGCGTAGGGATTGATCAGCTCTTTATCTCGACCTTTACA
GTCAAAGCGGCTGGTGAGTTGAAGGAGCGGATCGAGAAAAATCTCAATGAAACCATTGCGGAGACGATGGATATGGACTT
GCGTCGGCATTTGTCAGCCCAGTTGGCGGATTTGACCAAGGCGGATATTGGGACAATGGACTCCTTTACGCAGAAATTGG
TAACGACTTACGGTTATAGCCTTGGCATTTCTCCACAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGTGCATTCCGAAAATTGGTACGCAATTT
TTCAGGCAACCGGAAGGATAATGGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACAAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCTGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCCGCCAAGTATTTTGCAAATGTGGAAGAAGTTTTAGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAGCGGGTTGAAAAAGTCCTTCTTATCAACGACCAGTCCAGAGGCAAGGGTCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCTGGACTACGAGATTTGGGGCA
GGAAGTTTATGAATTAACCCTGCTGAAAGACTATCAGATTCAAGCTTTGCCAATGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGTGGACATTCGCCAGTTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGCTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGATATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAACTTTACCAGGCAGATTCTCAGGCTGGA
AAATTGATTTTGCTTAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCGACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGATGAAACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTGATTTACGACCAGCAGGATAGCGCAAACTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATCGAGGTTGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTGCAAAAACGGACGCACAATGACCTCATTATATCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCTCTTCTCAAATCGCCTATGTTCCGATTCGATGAGGATGAGCTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTATCTATTTTGGAAAACTGGCGTGCTTTTGCCAAAATGCATTCTATTTATGAC
CTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTCGGTGCTCTTCCAAATGGCAGCAAGCGTCAGGCAAA
TCTATATGCCCTAGGTTTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGCTTGTCTCGTTTCATCGTCATGATTG
ACCGTGCCTTAGCAAATGACAAGGACTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTTCAGCTGATGACCATT
CATAAGTCAAAAGGTCTAGAGTTCAAATATGTCTTCCTCATGAACATCGATAAACGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTGAATAGCCCATTAC
CTCAGGTGCGAGTCTTAATGAACACCCTTCCTTATCAAGATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTTTATGTTGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGATAAGTTAGC
TAAAAAATACGATGGCAAAAAGGCAGATGGCGTACTAGCCCAATCAACTCGTGAAAGCGTGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGAAAACTTACATTGAAGAGTAAGCTAGAAGATGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATTGC
TCAGGCCTTGGACCAGTTGTCTTCTGTTCAAGAGTTGAACGAACGCTATAAGGTTGCCATTGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCTAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAAGCCCTAGAAGCTGTTCATGCTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCACCATTTGCAAGTTTGCAGACAGATTCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
AGATGGCTACCTACTATATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAAGCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCCGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTCGAAGTCAAGGTAAACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.84

100

0.521