Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   APQ97_RS00660 Genome accession   NZ_CP012911
Coordinates   97251..98033 (+) Length   260 a.a.
NCBI ID   WP_002935335.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92251..103033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS00640 (APQ97_00640) mreD 93099..93587 (+) 489 WP_009908846.1 rod shape-determining protein MreD -
  APQ97_RS00645 (APQ97_00645) - 93672..94928 (+) 1257 WP_002935338.1 CHAP domain-containing protein -
  APQ97_RS00650 (APQ97_00650) - 95031..95999 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  APQ97_RS00655 (APQ97_00655) - 96086..97264 (+) 1179 WP_002935336.1 pyridoxal phosphate-dependent aminotransferase -
  APQ97_RS00660 (APQ97_00660) recO 97251..98033 (+) 783 WP_002935335.1 DNA repair protein RecO Machinery gene
  APQ97_RS00665 (APQ97_00665) plsX 98030..99037 (+) 1008 WP_002935334.1 phosphate acyltransferase PlsX -
  APQ97_RS00670 (APQ97_00670) - 99030..99278 (+) 249 WP_002935333.1 phosphopantetheine-binding protein -
  APQ97_RS00675 (APQ97_00675) purC 99396..100103 (+) 708 WP_002935328.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30486.97 Da        Isoelectric Point: 5.4193

>NTDB_id=137360 APQ97_RS00660 WP_002935335.1 97251..98033(+) (recO) [Streptococcus suis strain NSUI060]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=137360 APQ97_RS00660 WP_002935335.1 97251..98033(+) (recO) [Streptococcus suis strain NSUI060]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673

Multiple sequence alignment