Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   APQ97_RS00310 Genome accession   NZ_CP012911
Coordinates   59555..60145 (+) Length   196 a.a.
NCBI ID   WP_004194470.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54555..65145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS00300 (APQ97_00300) - 56088..57377 (-) 1290 WP_002937360.1 IS4-like element ISSsu2 family transposase -
  APQ97_RS00305 (APQ97_00305) hexB 57579..59516 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  APQ97_RS00310 (APQ97_00310) ruvA 59555..60145 (+) 591 WP_004194470.1 Holliday junction branch migration protein RuvA Machinery gene
  APQ97_RS00315 (APQ97_00315) - 60399..60968 (+) 570 WP_004194469.1 DNA-3-methyladenine glycosylase I -
  APQ97_RS00320 (APQ97_00320) cinA 61005..62186 (+) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  APQ97_RS00325 (APQ97_00325) recA 62238..63389 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  APQ97_RS00330 (APQ97_00330) spx 63625..64023 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  APQ97_RS00335 (APQ97_00335) - 64123..64389 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  APQ97_RS00340 (APQ97_00340) ruvX 64389..64808 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  APQ97_RS00345 (APQ97_00345) - 64820..65140 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21725.08 Da        Isoelectric Point: 5.0727

>NTDB_id=137355 APQ97_RS00310 WP_004194470.1 59555..60145(+) (ruvA) [Streptococcus suis strain NSUI060]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=137355 APQ97_RS00310 WP_004194470.1 59555..60145(+) (ruvA) [Streptococcus suis strain NSUI060]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACACAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCATACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCTCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403

Multiple sequence alignment