Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SD89_RS09235 Genome accession   NZ_CP010449
Coordinates   1866041..1866754 (+) Length   237 a.a.
NCBI ID   WP_053308670.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS322     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861041..1871754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD89_RS09225 (SD89_09255) treC 1862111..1863739 (-) 1629 WP_053308668.1 alpha,alpha-phosphotrehalase -
  SD89_RS09230 (SD89_09260) treP 1863806..1865830 (-) 2025 WP_053308669.1 PTS system trehalose-specific EIIBC component -
  SD89_RS09235 (SD89_09265) treR 1866041..1866754 (+) 714 WP_053308670.1 trehalose operon repressor Regulator
  SD89_RS09240 (SD89_09270) - 1867033..1867370 (-) 338 Protein_1798 winged helix-turn-helix transcriptional regulator -
  SD89_RS09245 (SD89_09275) - 1867557..1868414 (+) 858 WP_053308671.1 VOC family protein -
  SD89_RS09250 (SD89_09280) yaaA 1868456..1869187 (+) 732 WP_053308672.1 peroxide stress protein YaaA -
  SD89_RS09255 (SD89_09285) nrdG 1869361..1869975 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SD89_RS09260 (SD89_09290) - 1869975..1870484 (-) 510 WP_011018311.1 GNAT family N-acetyltransferase -
  SD89_RS09265 (SD89_09295) - 1870493..1871428 (-) 936 WP_053308673.1 Gfo/Idh/MocA family protein -
  SD89_RS10365 - 1871457..1871603 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27665.88 Da        Isoelectric Point: 9.7425

>NTDB_id=137355 SD89_RS09235 WP_053308670.1 1866041..1866754(+) (treR) [Streptococcus pyogenes strain NGAS322]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFRKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRTK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=137355 SD89_RS09235 WP_053308670.1 1866041..1866754(+) (treR) [Streptococcus pyogenes strain NGAS322]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTCGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCTCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGAACAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment