Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   APV63_RS05650 Genome accession   NZ_CP012905
Coordinates   1209720..1210769 (+) Length   349 a.a.
NCBI ID   WP_060473495.1    Uniprot ID   -
Organism   Helicobacter pylori strain 7C     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204720..1215769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APV63_RS05630 (APV63_05625) - 1205000..1205185 (+) 186 WP_060473490.1 hypothetical protein -
  APV63_RS05635 (APV63_05630) - 1205280..1207118 (+) 1839 Protein_1104 hypothetical protein -
  APV63_RS05640 (APV63_05635) asd 1207297..1208343 (-) 1047 WP_060473491.1 aspartate-semialdehyde dehydrogenase -
  APV63_RS05645 (APV63_05640) hisS 1208330..1209658 (-) 1329 WP_060473493.1 histidine--tRNA ligase -
  APV63_RS05650 (APV63_05645) waaF 1209720..1210769 (+) 1050 WP_060473495.1 lipopolysaccharide heptosyltransferase II Regulator
  APV63_RS05655 (APV63_05650) - 1210953..1211288 (-) 336 WP_060473497.1 hypothetical protein -
  APV63_RS05660 (APV63_05655) - 1211506..1212495 (+) 990 WP_060473499.1 aldo/keto reductase -
  APV63_RS05665 (APV63_05660) fusA 1213016..1215094 (-) 2079 WP_000101832.1 elongation factor G -
  APV63_RS05670 (APV63_05665) rpsG 1215106..1215573 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39591.24 Da        Isoelectric Point: 9.4627

>NTDB_id=137345 APV63_RS05650 WP_060473495.1 1209720..1210769(+) (waaF) [Helicobacter pylori strain 7C]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLEAARTLLEKS

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=137345 APV63_RS05650 WP_060473495.1 1209720..1210769(+) (waaF) [Helicobacter pylori strain 7C]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AAAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.994

99.14

0.367

Multiple sequence alignment