Detailed information NTG0137292

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY09_RS25530
• Genome accession: NZ_CP012901
• Coordinates: 5357290..5358294 (-)
• Length: 334 a.a.
• NCBI ID: WP_050157670.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain N15-01092
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5352290..5363294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY09_RS25510 (AOY09_04967)	-	5352773..5353780 (+)	1008	WP_012613731.1	TolB family protein	-
AOY09_RS25520 (AOY09_04968)	mutS	5353906..5356473 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
AOY09_RS25525 (AOY09_04969)	fdxA	5356540..5356863 (+)	324	WP_003092272.1	ferredoxin FdxA	-
AOY09_RS25530 (AOY09_04970)	rpoS	5357290..5358294 (-)	1005	WP_050157670.1	RNA polymerase sigma factor RpoS	Regulator
AOY09_RS25535 (AOY09_04971)	-	5358399..5359292 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
AOY09_RS25540 (AOY09_04972)	-	5359338..5359973 (-)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AOY09_RS25545 (AOY09_04973)	surE	5360006..5360755 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AOY09_RS25550 (AOY09_04974)	truD	5360743..5361810 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
AOY09_RS25555 (AOY09_04975)	ispF	5361807..5362280 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY09_RS25560 (AOY09_04976)	fghA	5362351..5363202 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38249.41 Da
• Isoelectric Point: 5.0478

>NTDB_id=137292 AOY09_RS25530 WP_050157670.1 5357290..5358294(-) (rpoS) [Pseudomonas aeruginosa strain N15-01092]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVIKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=137292 AOY09_RS25530 WP_050157670.1 5357290..5358294(-) (rpoS) [Pseudomonas aeruginosa strain N15-01092]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGATCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.159	98.204	0.65