Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AOY09_RS19420 Genome accession   NZ_CP012901
Coordinates   4136493..4136987 (+) Length   164 a.a.
NCBI ID   WP_023435210.1    Uniprot ID   A0ABZ2JEF6
Organism   Pseudomonas aeruginosa strain N15-01092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4131493..4141987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY09_RS19405 (AOY09_03776) - 4132171..4132611 (+) 441 WP_023435212.1 TIGR03751 family conjugal transfer lipoprotein -
  AOY09_RS19410 (AOY09_03777) - 4132611..4135511 (+) 2901 WP_023435211.1 conjugative transfer ATPase -
  AOY09_RS19415 (AOY09_03778) - 4135525..4136310 (+) 786 WP_022580333.1 DsbA family protein -
  AOY09_RS19420 (AOY09_03779) radC 4136493..4136987 (+) 495 WP_023435210.1 JAB domain-containing protein Machinery gene
  AOY09_RS19425 (AOY09_03780) - 4137150..4137596 (+) 447 WP_022581019.1 TIGR03757 family integrating conjugative element protein -
  AOY09_RS19430 (AOY09_03781) - 4137593..4138540 (+) 948 WP_022581020.1 TIGR03756 family integrating conjugative element protein -
  AOY09_RS19435 (AOY09_03782) - 4138551..4139945 (+) 1395 WP_022581021.1 integrating conjugative element protein -
  AOY09_RS19440 (AOY09_03783) - 4139942..4140313 (+) 372 WP_022581022.1 hypothetical protein -
  AOY09_RS19445 (AOY09_03784) - 4140329..4141849 (+) 1521 WP_022581023.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17975.67 Da        Isoelectric Point: 6.7513

>NTDB_id=137271 AOY09_RS19420 WP_023435210.1 4136493..4136987(+) (radC) [Pseudomonas aeruginosa strain N15-01092]
MSLVANDSCVEPRFAPASQSDDWIIRQGIALLEQRVFKKGPSLERPAAVKDYLRLKLAAEPNEIFAIVFLNSMHEVLAYE
PMFRGTIHSTSVHARPIVQRALELNAAAVIFSHQHPSGCTEPSSADRALTQTLRAALSLIDVKVLDHLIVGQGTPYSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=137271 AOY09_RS19420 WP_023435210.1 4136493..4136987(+) (radC) [Pseudomonas aeruginosa strain N15-01092]
ATGTCTCTCGTCGCCAACGACTCCTGCGTGGAGCCACGTTTTGCCCCCGCGTCCCAATCCGATGACTGGATCATCCGGCA
AGGCATCGCGCTGCTGGAGCAGCGGGTCTTCAAGAAGGGGCCATCCCTGGAACGGCCCGCCGCCGTCAAGGACTACCTGC
GCCTGAAACTGGCCGCCGAGCCCAATGAAATCTTCGCCATCGTGTTCCTCAACAGCATGCACGAGGTGCTGGCCTACGAG
CCGATGTTCAGAGGCACGATCCATTCGACCTCGGTGCATGCGCGTCCGATCGTGCAGCGTGCCTTGGAACTGAATGCGGC
AGCGGTCATTTTTTCTCACCAACACCCTTCGGGCTGCACGGAGCCGTCAAGCGCGGACCGCGCGTTGACCCAAACGCTGA
GGGCGGCATTGTCGCTGATCGACGTGAAGGTGCTGGATCACCTCATCGTCGGCCAAGGCACGCCGTACTCGTTTGCGGAA
TCCGGCCTGCTATAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.096

89.024

0.366