Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AOY09_RS07610 Genome accession   NZ_CP012901
Coordinates   1646206..1646700 (+) Length   164 a.a.
NCBI ID   WP_003140985.1    Uniprot ID   A0A8D3Y2U6
Organism   Pseudomonas aeruginosa strain N15-01092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641206..1651700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY09_RS07595 (AOY09_01491) - 1641934..1642368 (+) 435 WP_020193564.1 TIGR03751 family conjugal transfer lipoprotein -
  AOY09_RS07600 (AOY09_01492) - 1642368..1645253 (+) 2886 WP_119163130.1 conjugative transfer ATPase -
  AOY09_RS07605 (AOY09_01493) - 1645267..1646010 (+) 744 WP_016446150.1 DsbA family protein -
  AOY09_RS07610 (AOY09_01494) radC 1646206..1646700 (+) 495 WP_003140985.1 RadC family protein Machinery gene
  AOY09_RS07615 (AOY09_01495) - 1646891..1647367 (+) 477 WP_016446149.1 MerR family transcriptional regulator -
  AOY09_RS07620 (AOY09_01496) - 1647364..1650327 (+) 2964 WP_018076246.1 HsdM family class I SAM-dependent methyltransferase -
  AOY09_RS07625 (AOY09_01497) - 1650477..1650995 (+) 519 WP_017462901.1 hypothetical protein -
  AOY09_RS07630 (AOY09_01498) - 1651139..1651582 (+) 444 WP_023125138.1 TIGR03757 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17836.49 Da        Isoelectric Point: 6.3309

>NTDB_id=137250 AOY09_RS07610 WP_003140985.1 1646206..1646700(+) (radC) [Pseudomonas aeruginosa strain N15-01092]
MSLAIADSRPESLTLIAAQHEDWIIQQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAYE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRVITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=137250 AOY09_RS07610 WP_003140985.1 1646206..1646700(+) (radC) [Pseudomonas aeruginosa strain N15-01092]
ATGTCTCTTGCCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCAGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCGGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTACGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCATCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGTGATCACCGAGCGGCTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8D3Y2U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421