Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBMN23_RS00510 Genome accession   NZ_CP010437
Coordinates   138076..139917 (+) Length   613 a.a.
NCBI ID   WP_039774632.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain BB23     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 133076..144917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBMN23_RS00485 (BBMN23_0097) thiF 133078..133791 (-) 714 WP_039774627.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBMN23_RS00490 (BBMN23_0098) thiS 133844..134038 (-) 195 WP_039774628.1 sulfur carrier protein ThiS -
  BBMN23_RS00495 (BBMN23_0099) - 134543..135511 (+) 969 WP_039774629.1 aldo/keto reductase -
  BBMN23_RS00500 (BBMN23_0100) - 135695..136186 (+) 492 WP_003807375.1 MarR family transcriptional regulator -
  BBMN23_RS00505 (BBMN23_0101) rcrP 136313..138064 (+) 1752 WP_039774631.1 ABC transporter ATP-binding protein Regulator
  BBMN23_RS00510 (BBMN23_0102) rcrQ 138076..139917 (+) 1842 WP_039774632.1 ABC transporter ATP-binding protein Regulator
  BBMN23_RS00515 (BBMN23_0103) - 140088..141068 (+) 981 WP_039774634.1 aldo/keto reductase -
  BBMN23_RS00520 (BBMN23_0104) - 141153..142112 (-) 960 WP_039774636.1 FAD:protein FMN transferase -
  BBMN23_RS00525 (BBMN23_0105) - 142557..144242 (+) 1686 WP_229037316.1 FTR1 family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67429.23 Da        Isoelectric Point: 6.7614

>NTDB_id=137124 BBMN23_RS00510 WP_039774632.1 138076..139917(+) (rcrQ) [Bifidobacterium adolescentis strain BB23]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMILALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSITLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNKDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGNIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGADGKPRPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLIE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=137124 BBMN23_RS00510 WP_039774632.1 138076..139917(+) (rcrQ) [Bifidobacterium adolescentis strain BB23]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTCTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTGCGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTGATCACTTCGATCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAAAGACCTGTACGTGTCCGGCTGGAAAAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCCATGGACGGCAATATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGAGCC
GGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTCGGCGTCGGTGCGGACGGCAAGCCGCGGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGTCAGCTGCTGACGATCGCGCGAGCGATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCCACCTCGTCCGTCGACACCCGTACCGAAGAGCTGATTCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGATGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGATCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(36-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.653

96.411

0.527

Multiple sequence alignment