Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBMN23_RS00505 Genome accession   NZ_CP010437
Coordinates   136313..138064 (+) Length   583 a.a.
NCBI ID   WP_039774631.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain BB23     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 131313..143064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBMN23_RS00480 (BBMN23_0095) - 132007..132921 (-) 915 WP_080755263.1 thiazole synthase -
  BBMN23_RS00485 (BBMN23_0097) thiF 133078..133791 (-) 714 WP_039774627.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBMN23_RS00490 (BBMN23_0098) thiS 133844..134038 (-) 195 WP_039774628.1 sulfur carrier protein ThiS -
  BBMN23_RS00495 (BBMN23_0099) - 134543..135511 (+) 969 WP_039774629.1 aldo/keto reductase -
  BBMN23_RS00500 (BBMN23_0100) - 135695..136186 (+) 492 WP_003807375.1 MarR family transcriptional regulator -
  BBMN23_RS00505 (BBMN23_0101) rcrP 136313..138064 (+) 1752 WP_039774631.1 ABC transporter ATP-binding protein Regulator
  BBMN23_RS00510 (BBMN23_0102) rcrQ 138076..139917 (+) 1842 WP_039774632.1 ABC transporter ATP-binding protein Regulator
  BBMN23_RS00515 (BBMN23_0103) - 140088..141068 (+) 981 WP_039774634.1 aldo/keto reductase -
  BBMN23_RS00520 (BBMN23_0104) - 141153..142112 (-) 960 WP_039774636.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64448.62 Da        Isoelectric Point: 6.1147

>NTDB_id=137123 BBMN23_RS00505 WP_039774631.1 136313..138064(+) (rcrP) [Bifidobacterium adolescentis strain BB23]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITTLVETPGSKMHDIWVAGGKMLLVSLGSAACAVVTGYIAA
RVGASFSQRLRSLEFKKVESFGPAEMSRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=137123 BBMN23_RS00505 WP_039774631.1 136313..138064(+) (rcrP) [Bifidobacterium adolescentis strain BB23]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCTTGCCGGACTACATGGCCGACATCACCACGCTGGTGGAAACCCCCGGCAGCAAGATGCACGACA
TCTGGGTGGCGGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCCGCGGCGTGCGCCGTCGTCACCGGCTACATCGCCGCA
CGCGTGGGTGCCTCGTTCAGCCAGCGCCTGCGCTCGCTCGAATTCAAGAAGGTGGAAAGCTTCGGCCCGGCCGAAATGAG
CCGATTCTCCACCGCATCGCTGATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGTCTAA
TGATGATCGTCAAGGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTATCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGCGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(16-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.251

100

0.515

Multiple sequence alignment