Detailed information NTG0137115

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AOT11_RS04190
• Genome accession: NZ_CP012881
• Coordinates: 920034..922607 (-)
• Length: 857 a.a.
• NCBI ID: WP_017419679.1
• Uniprot ID: -
• Organism: Vibrio vulnificus NBRC 15645 = ATCC 27562
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 915034..927607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOT11_RS04190 (AOT11_11310)	clpC	920034..922607 (-)	2574	WP_017419679.1	ATP-dependent chaperone ClpB	Regulator
AOT11_RS04195 (AOT11_11315)	pgeF	922725..923441 (-)	717	WP_172840595.1	peptidoglycan editing factor PgeF	-
AOT11_RS04200 (AOT11_11320)	rluD	923445..924422 (-)	978	WP_017419681.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AOT11_RS04205 (AOT11_11325)	comL	924559..925284 (+)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
AOT11_RS04210 (AOT11_11330)	hpf	925637..925960 (+)	324	WP_017419682.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
AOT11_RS04215 (AOT11_11335)	pheA	926204..927382 (+)	1179	WP_011078576.1	prephenate dehydratase	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96026.94 Da
• Isoelectric Point: 5.2921

>NTDB_id=137115 AOT11_RS04190 WP_017419679.1 920034..922607(-) (clpC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLATFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLATRMEEHGYQLEVSDKAL
DLIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=137115 AOT11_RS04190 WP_017419679.1 920034..922607(-) (clpC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAATGGCAGTCCTATTCGTCCACTGTTGACCATCTTAA
ATGTGGATGTCACCCACCTACGTTCAAAACTCAGTGAAATGCTGGATCGCTTACCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTCTCCTCGGCCATGGGCGCGATGTTTAACCTGTGCGATAAGATTGCACAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGGCCACTTGGTCAACTCTTCAAAGAACTTGGCTTAACCGAAC
AAAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGCGCAGAGCAGGGCAAACTTGACCCTGTGATTGGTCGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGTACCAAAAACAACCCCGTGATCATTGGTGAACCCGGTGTCGGTAAAACCG
CCATCGTTGAAGGCTTAGCGCAACGCATCATCAATAACGAGGTGCCTGAAGGTTTGCGTGGTCGCCGAGTGTTATCACTC
GATATGGGCGCTTTGGTGGCTGGAGCGAAGTACCGTGGTGAGTTTGAAGAGCGACTTAAATCCGTATTGAATGAGCTCTC
TAAAGAAGAAGGCAATATCATCCTCTTTATTGATGAGCTTCATACCATGGTTGGCGCAGGTAAAGGTGAAGGTTCGATGG
ATGCCGGCAATATGCTCAAGCCCGCACTAGCGCGTGGTGAGTTACATTGTGTGGGCGCCACGACACTCGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCTCTTGAGCGCCGCTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTGGAAGATACCAT
TGCGATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCACCATCACGTTGAGATCACCGATCCTGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCGGATAAGGCGATCGATCTTATCGACGAAGCAGCATCCAGT
ATTCGTATGCAGATCGATTCTAAACCCGAAGCCCTGGATAAGTTGGAGCGCAAAATCATCCAACTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCAAGTGAAAAGCGTCTGCGCTCACTCAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCAGCTCTATCTGGCACTCAGCATATTAAAGCGGCGTTAGAG
CAAGCGCGCATGGATATGGAGTTTGCAAGACGAGCTGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGTCGTATTCC
AGAGCTTGAGAAGCAACTTGACTTAGCAACGCAAGCGGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCAAAGCAAACGGGTATCCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTGCTT
CGCATGGAAGAGGTGTTGCATAAACGCGTCATTGGGCAGAAAGAGGCGGTGGAAGTTGTTGCGAATGCGATACGCCGAAG
CCGAGCAGGCTTGTCTGATCCCAATAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACCGGCGTGGGGAAAACGGAAC
TGTGCAAGACATTGGCGACCTTCATGTTCGACAGTGAGGATGCCATGGTGCGTATCGACATGTCCGAGTTTATGGAGAAA
CACTCAGTGGCGCGCTTAGTCGGTGCTCCTCCAGGCTATGTGGGTTATGAAGAAGGTGGCTACTTAACGGAAGCCGTTCG
ACGTAAGCCTTATTCAGTAATTTTGCTCGACGAAGTGGAAAAGGCGCATCCTGATGTGTTCAACATCCTGCTGCAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTTATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTAATGGAAGTGGTAACCAA
GCACTTTAGGCCGGAGTTTTTGAACCGTGTTGATGAGACTGTTGTCTTCCACCCACTAGGCCAAGACCACATTAAGTCGA
TCGCTGCGATTCAACTTAACCGCTTGGCGACTCGCATGGAAGAGCATGGCTATCAATTGGAAGTGTCCGATAAAGCGCTC
GACTTGATCGCGCAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAAAA
CCCGCTGGCGAAATCTATTTTGGCGGGCTCGGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.828	100	0.474
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.52	99.767	0.414
clpE	Streptococcus mutans UA159	48.012	79.23	0.38
clpE	Streptococcus pneumoniae D39	48.006	78.996	0.379
clpE	Streptococcus pneumoniae Rx1	48.006	78.996	0.379
clpE	Streptococcus pneumoniae R6	48.006	78.996	0.379
clpC	Lactococcus lactis subsp. cremoris KW2	45.864	80.397	0.369