Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   AOT11_RS02680 Genome accession   NZ_CP012881
Coordinates   611414..614818 (-) Length   1134 a.a.
NCBI ID   WP_017421007.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 606414..619818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS02660 (AOT11_09815) - 607362..607790 (+) 429 WP_026050454.1 HIT family protein -
  AOT11_RS02665 (AOT11_09820) - 607899..608129 (-) 231 WP_011149800.1 FeoC-like transcriptional regulator -
  AOT11_RS02670 (AOT11_09825) feoB 608126..610402 (-) 2277 WP_026050455.1 Fe(2+) transporter permease subunit FeoB -
  AOT11_RS02675 (AOT11_09830) - 610402..610629 (-) 228 WP_017421006.1 FeoA family protein -
  AOT11_RS02680 (AOT11_09835) tfoS 611414..614818 (-) 3405 WP_017421007.1 AraC family transcriptional regulator Regulator
  AOT11_RS02685 (AOT11_09840) znuA 614990..615865 (-) 876 WP_017421008.1 zinc ABC transporter substrate-binding protein ZnuA -
  AOT11_RS02690 (AOT11_09845) znuC 615947..616732 (+) 786 WP_017421009.1 zinc ABC transporter ATP-binding protein ZnuC -
  AOT11_RS02695 (AOT11_09850) znuB 616725..617510 (+) 786 WP_017421010.1 zinc ABC transporter permease subunit ZnuB -
  AOT11_RS02700 (AOT11_09855) sucD 617592..618464 (-) 873 WP_017421011.1 succinate--CoA ligase subunit alpha -
  AOT11_RS02705 (AOT11_09860) sucC 618464..619630 (-) 1167 WP_017421012.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126515.14 Da        Isoelectric Point: 5.3871

>NTDB_id=137111 AOT11_RS02680 WP_017421007.1 611414..614818(-) (tfoS) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MLRILAWLLLAGLTLPFKALALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
FPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLNGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGALWFAGTHGIYRKDPTEKTLGELALPQENVKPICLITDASGIWMVSS
IGLSFYNFDGALRKHFGSRSGIMSNEFVEGSCAASFGEAQSGSVLVLGSKHGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANVGQKEWQLPELAYGSAISFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSVEPASEYQEHQMRIAMLLEELKSSPSDGTDGYLQNFNVSHIIQSVVDVWEDELSKIGVQVHI
SSESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTNTDAEDSAGVEPAKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSVFVDSVDLSPVTEVSSEGAPSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKMLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=137111 AOT11_RS02680 WP_017421007.1 611414..614818(-) (tfoS) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
TTGCTGCGTATTCTTGCCTGGCTTCTACTCGCAGGGCTTACACTACCGTTCAAAGCGCTAGCTTTGGACGGAAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCTGCTAAAAATCTCTTTGTTGGTGGTGATGGTGGTT
TATGGATACATGACGTGCACGGCAAAGTGCAATATTTCGATGGTAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TTTCCTTCCGAGCAAGTAGCCTTTCACCAAGGCAGTTTTTGGACTTTTGTCGCGAACGAAGTCTTCCAAACGTACCCCAA
TCAGAAACGTCAGTTAGCGTTTAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGTCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACTTATTCCTTACTCTCGTTGTATCAA
AATAATCAGAGTAGTTACGTCTACATCAATGATGCAAAGAGGGTTTTAAGCAAATGGGTACTTGGTACCACATCGGGAGC
TTATCTATCACAAGGTGAGCAATTTACTCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCCA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACAGAACATGGTCTGTACAGTTA
CTCGTTTTTAAATGGACAAGTGGCCAAAGTGAAAGCCGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACT
CGCTGGTGAATGATGAACAAGGGGGCATTTGGGTTGCGACGAACAGTGGTATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAACATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGGGCCATTGGGGTTAATAAACAATACAGCCGCGTGCGTTTGC
CGATAAAGGTAAATGACTTTGCCCTTGAAGATGGAAACATCTGGATTGCTTCCGAGCAAGGTTTGTATATTTACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCGAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATCAGTTCGGGTTATCGATTAGCCGCCATTGGCGTTGCCGATGGGCGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCATGGGGCTTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGCGAAAGTGTCGATAT
CGCAGAAGCGAAAGATGGGGCGTTATGGTTTGCAGGGACTCACGGCATCTATCGTAAAGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCCTAATCACCGATGCTAGTGGCATTTGGATGGTGAGTTCA
ATTGGCCTCAGTTTTTACAATTTTGACGGAGCACTGCGTAAGCACTTTGGGTCTCGCTCGGGCATTATGAGTAACGAGTT
CGTTGAAGGCTCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAGCATGGCTTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGACGAT
CAGGTTGCAAATGTCGGACAAAAAGAGTGGCAATTACCCGAGTTAGCGTATGGTTCTGCGATCAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTCTATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCCGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGTTTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCGATTTTTGTTCTGCTTATCGTAGCGTTAGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAACCGTGAGTTAACGGCATTGGTGGCATTGAAGACCAATCAAT
TACGTCATCAGAGTCGAGTGCTGCTCACCAGTAACCAACAACTTCGCAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTGAGCAAGCCATCGGTTGAACCTGCCTCAGAGTATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGTTAAAAAGCTCGCCCAGCGATGGAACTGACGGGTATCTGCAAAACT
TTAACGTCAGCCATATCATTCAGTCGGTTGTCGACGTTTGGGAAGATGAACTCAGTAAAATCGGTGTTCAGGTGCACATT
TCTAGCGAATCGGATGACTATCGTGTCGCAGTAGGGCAGTTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTTGATATTGTGATCAGAGAGCAAAACGATTTTGTCGAAGTGTCATTTATTG
ATTTTGGCCAGCCCTTTAGTACGAATACGGACGCCGAGGATAGCGCTGGTGTTGAGCCGGCAAAAGTCGATACTGCAATT
GAGAAGCTACCTGCTTTAGTCGAACAAAGTGGCGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCGAAAGCGGTTGAGTCTCTGATAAATGACGAAGAGCCAAGCGTTTTTGTTGATTCAGTCGATCTCTCTCCAG
TTACGGAAGTCTCATCCGAAGGCGCTCCATCGCCAGAGCAGTTGTGGCTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAGATGCTCTATGTTTCTGAGCGCAGCCTACAGAGACGGTTTAA
ATCAGCGAGCTCTCGTACATTTACGGATTACCTCACCGAAGTTCGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCCGGTG
AAAAAGTGGTTGATGTGGCTTTCGCATCGGGATTTAACGATCCTTCCTATTTTAGTCAACGTTTTAAACTGTACTTTGGC
GTGCCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.51

100

0.399

Multiple sequence alignment