Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   SE87_RS02370 Genome accession   NZ_CP010435
Coordinates   475717..475980 (+) Length   87 a.a.
NCBI ID   WP_001177716.1    Uniprot ID   T0EUE0
Organism   Helicobacter pylori 26695-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470717..480980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE87_RS02345 (SE87_02345) - 473286..473954 (+) 669 WP_001862498.1 AAA family ATPase -
  SE87_RS02350 (SE87_02350) - 473932..474719 (+) 788 Protein_436 integrase -
  SE87_RS02355 (SE87_02355) - 474722..474952 (+) 231 WP_000189081.1 hypothetical protein -
  SE87_RS02360 (SE87_02360) - 474945..475424 (+) 480 WP_000593414.1 hypothetical protein -
  SE87_RS02365 (SE87_02365) comB2 475421..475705 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  SE87_RS02370 (SE87_02370) comB3 475717..475980 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  SE87_RS02375 (SE87_02375) - 475992..476228 (+) 237 WP_001168532.1 hypothetical protein -
  SE87_RS02380 (SE87_02380) - 476228..478804 (+) 2577 WP_000893960.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  SE87_RS08870 (SE87_02385) - 478801..478941 (+) 141 WP_000789926.1 hypothetical protein -
  SE87_RS02390 (SE87_02390) - 478934..479410 (+) 477 Protein_444 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9970.83 Da        Isoelectric Point: 5.7206

>NTDB_id=137091 SE87_RS02370 WP_001177716.1 475717..475980(+) (comB3) [Helicobacter pylori 26695-1]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=137091 SE87_RS02370 WP_001177716.1 475717..475980(+) (comB3) [Helicobacter pylori 26695-1]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0EUE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609

Multiple sequence alignment