Detailed information NTG0137050

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QR63_RS08690
• Genome accession: NZ_CP012870
• Coordinates: 1774105..1775097 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain K-12 substr. MG1655_TMP32XR2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1769105..1780097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR63_RS08660 (QR63_08660)	ispD	1769166..1769876 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QR63_RS08665 (QR63_08665)	ispF	1769876..1770355 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QR63_RS08670 (QR63_08670)	truD	1770352..1771401 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QR63_RS08675 (QR63_08675)	surE	1771382..1772143 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QR63_RS08680 (QR63_08680)	pcm	1772137..1772763 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QR63_RS08685 (QR63_08685)	nlpD	1772948..1774042 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QR63_RS08690 (QR63_08690)	rpoS	1774105..1775097 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
QR63_RS08695 (QR63_08695)	ygbN	1775191..1776555 (-)	1365	WP_000104441.1	GntP family transporter	-
QR63_RS08700 (QR63_08700)	ygbM	1776644..1777420 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QR63_RS08705 (QR63_08705)	ygbL	1777425..1778063 (-)	639	WP_001278994.1	aldolase	-
QR63_RS08710 (QR63_08710)	otnK	1778155..1779321 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=137050 QR63_RS08690 WP_000081588.1 1774105..1775097(+) (rpoS) [Escherichia coli strain K-12 substr. MG1655_TMP32XR2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=137050 QR63_RS08690 WP_000081588.1 1774105..1775097(+) (rpoS) [Escherichia coli strain K-12 substr. MG1655_TMP32XR2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715