Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | QR62_RS25100 | Genome accession | NZ_CP012869 |
| Coordinates | 2564900..2565346 (-) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli strain K-12 substr. MG1655_TMP32XR1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2559900..2570346
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR62_RS12440 (QR62_12440) | sbmC | 2560392..2560865 (+) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
| QR62_RS12445 (QR62_12445) | yeeA | 2561063..2562121 (+) | 1059 | WP_001200891.1 | FUSC family protein | - |
| QR62_RS12450 (QR62_12450) | tmaR | 2562293..2562622 (+) | 330 | WP_000450409.1 | DUF496 family protein | - |
| QR62_RS12455 (QR62_12455) | - | 2562723..2562905 (-) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| QR62_RS23955 | - | 2562977..2563105 (+) | 129 | Protein_2369 | transposase domain-containing protein | - |
| QR62_RS25945 (QR62_12460) | - | 2563394..2563486 (-) | 93 | Protein_2370 | DUF957 domain-containing protein | - |
| QR62_RS12465 (QR62_12465) | yeeW | 2563520..2563714 (-) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| QR62_RS12470 (QR62_12470) | cbtA | 2563711..2564085 (-) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| QR62_RS12475 (QR62_12475) | cbeA | 2564174..2564542 (-) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| QR62_RS12480 (QR62_12480) | yeeT | 2564616..2564837 (-) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| QR62_RS25100 (QR62_12485) | radC | 2564900..2565346 (-) | 447 | WP_000187523.1 | JAB domain-containing protein | Machinery gene |
| QR62_RS12490 (QR62_12490) | yeeR | 2565343..2566875 (-) | 1533 | WP_001350525.1 | protein YeeR | - |
| QR62_RS12495 (QR62_12495) | agn43 | 2566996..2570115 (-) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=137009 QR62_RS25100 WP_000187523.1 2564900..2565346(-) (radC) [Escherichia coli strain K-12 substr. MG1655_TMP32XR1]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=137009 QR62_RS25100 WP_000187523.1 2564900..2565346(-) (radC) [Escherichia coli strain K-12 substr. MG1655_TMP32XR1]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |