Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Achr_RS04745 Genome accession   NZ_CP010415
Coordinates   1042797..1044158 (-) Length   453 a.a.
NCBI ID   WP_039802310.1    Uniprot ID   A0A0C4WMG1
Organism   Azotobacter chroococcum NCIMB 8003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037797..1049158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Achr_RS04725 (Achr_9390) - 1037818..1039875 (-) 2058 WP_039802303.1 carbon starvation CstA family protein -
  Achr_RS04730 (Achr_9400) - 1040243..1041619 (+) 1377 WP_039802305.1 cache domain-containing protein -
  Achr_RS04735 (Achr_9410) - 1041633..1042259 (+) 627 WP_039802306.1 response regulator -
  Achr_RS04740 (Achr_9420) - 1042270..1042731 (-) 462 WP_039802308.1 methyltransferase family protein -
  Achr_RS04745 (Achr_9430) radA 1042797..1044158 (-) 1362 WP_039802310.1 DNA repair protein RadA Machinery gene
  Achr_RS04750 (Achr_9440) - 1044230..1044490 (-) 261 WP_039802311.1 YdcH family protein -
  Achr_RS04755 (Achr_9450) - 1044767..1045285 (-) 519 WP_039802313.1 Hcp family type VI secretion system effector -
  Achr_RS04760 (Achr_9460) glyA 1045614..1046867 (-) 1254 WP_039802315.1 serine hydroxymethyltransferase -
  Achr_RS04765 (Achr_9470) ettA 1047183..1048847 (+) 1665 WP_039802317.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48715.27 Da        Isoelectric Point: 6.8321

>NTDB_id=136975 Achr_RS04745 WP_039802310.1 1042797..1044158(-) (radA) [Azotobacter chroococcum NCIMB 8003]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLMETLLEGAATPNGRGGWAGQQANVRTLAEVSVEELPRFSTASKELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNVAERFPALYVTGEESQQQVAMRARRLDLPQDKLKVMTETCIEAIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAVFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHMGNP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALLAAVISSLRNRPLPHDLLVFGEIGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPRGNAPKEAPEGLSVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=136975 Achr_RS04745 WP_039802310.1 1042797..1044158(-) (radA) [Azotobacter chroococcum NCIMB 8003]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAGTG
CGGTGCCTGGAACACCCTGATGGAAACCCTGCTGGAAGGCGCGGCGACGCCGAACGGTCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACGTCAGGACCCTGGCGGAAGTCAGCGTCGAGGAACTGCCGCGCTTCTCCACCGCCTCCAAGGAACTCGACCGG
GTGCTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGGATCGGCAAGTCGACCATCCTCCT
GCAGACCCTGTGCAACGTCGCCGAGCGCTTCCCGGCGCTCTACGTCACCGGCGAGGAGTCCCAGCAGCAGGTCGCGATGC
GCGCCCGCCGCCTCGACCTGCCGCAGGACAAGCTCAAGGTGATGACCGAGACCTGCATCGAGGCGATCATCGCCACCGCC
CGCCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAGCTGCAGTCGGCCCCCGGCGG
CGTCGCCCAGGTGCGCGAGAGCGCCGCGCTCTTGGTGCGTTTCGCCAAGCAAAGCGGCACGGCGGTGTTCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCGCTGGCCGGTCCGCGGGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTCGAGGGCGAA
TCCGACGGTCGCCTGCGCCTGTTGCGGGCGGTGAAGAACCGCTTCGGCGCGATCAACGAGCTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTGAAGGAGGTTTCCAACCCCTCGGCGATCTTCCTCACCCGCGCCCAGGAGGAAGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACACCAGCCATATGGGCAACCCG
CGCCGCGTCACTCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGCGGCATCCCCAC
CTACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTACTGGAGACCGCCTCCGACCTGGCGCTGCTCGCCG
CGGTGATCTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTCCTGGTGTTCGGCGAGATCGGCCTGTCCGGCGAGATC
CGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCCGCGGCAA
CGCACCCAAGGAAGCGCCCGAGGGGCTCTCGGTGATTCCGGTGACGCGCCTGGAGCAGGCACTGGATGCGCTGTTCGAGT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C4WMG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.018

100

0.481
  radA Streptococcus pneumoniae Rx1

46.035

100

0.461
  radA Streptococcus pneumoniae D39

46.035

100

0.461
  radA Streptococcus pneumoniae R6

46.035

100

0.461
  radA Streptococcus pneumoniae TIGR4

46.035

100

0.461
  radA Streptococcus mitis SK321

46.035

100

0.461
  radA Streptococcus mitis NCTC 12261

45.815

100

0.459

Multiple sequence alignment