Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QR62_RS09160 Genome accession   NZ_CP012869
Coordinates   1864788..1865270 (-) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli strain K-12 substr. MG1655_TMP32XR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1859788..1870270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR62_RS09150 (QR62_09150) ypjF 1863874..1864203 (-) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -
  QR62_RS09155 (QR62_09155) yfjZ 1864224..1864541 (-) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  QR62_RS23770 ypjJ 1864579..1864779 (-) 201 WP_001395452.1 DUF987 domain-containing protein -
  QR62_RS09160 (QR62_09160) radC 1864788..1865270 (-) 483 WP_001407480.1 JAB domain-containing protein Machinery gene
  QR62_RS09165 (QR62_09165) lfgA 1865279..1865737 (-) 459 WP_000211841.1 antirestriction protein -
  QR62_RS23775 - 1865840..1866000 (-) 161 Protein_1729 DUF905 family protein -
  QR62_RS09170 (QR62_09170) yfjW 1866635..1868338 (-) 1704 WP_000896263.1 protein YfjW -
  QR62_RS09175 (QR62_09175) - 1868474..1869489 (+) 1016 Protein_1731 arsenic transporter -
  QR62_RS26270 - 1869502..1869654 (+) 153 Protein_1732 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=136972 QR62_RS09160 WP_001407480.1 1864788..1865270(-) (radC) [Escherichia coli strain K-12 substr. MG1655_TMP32XR1]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=136972 QR62_RS09160 WP_001407480.1 1864788..1865270(-) (radC) [Escherichia coli strain K-12 substr. MG1655_TMP32XR1]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375