Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RY69_RS10065 Genome accession   NZ_CP010413
Coordinates   2302845..2304674 (+) Length   609 a.a.
NCBI ID   WP_080790593.1    Uniprot ID   -
Organism   Bifidobacterium breve strain BR3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2297845..2309674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY69_RS12270 - 2299354..2299656 (-) 303 WP_335337622.1 DUF1684 domain-containing protein -
  RY69_RS10055 (RY69_2136) - 2300140..2300661 (+) 522 WP_052790608.1 MarR family winged helix-turn-helix transcriptional regulator -
  RY69_RS10060 (RY69_2137) rcrP 2300845..2302713 (+) 1869 WP_060618911.1 ABC transporter ATP-binding protein Regulator
  RY69_RS10065 (RY69_2138) rcrQ 2302845..2304674 (+) 1830 WP_080790593.1 ABC transporter ATP-binding protein Regulator
  RY69_RS10070 (RY69_2139) - 2304683..2305624 (-) 942 WP_060618913.1 FAD:protein FMN transferase -
  RY69_RS10075 (RY69_2140) - 2305729..2307147 (+) 1419 WP_143247947.1 MFS transporter -
  RY69_RS10085 (RY69_2142) rsmI 2307807..2308826 (+) 1020 WP_060618915.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RY69_RS12135 (RY69_2143) - 2308946..2309104 (-) 159 WP_003829623.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66634.99 Da        Isoelectric Point: 5.7893

>NTDB_id=136969 RY69_RS10065 WP_080790593.1 2302845..2304674(+) (rcrQ) [Bifidobacterium breve strain BR3]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALSD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=136969 RY69_RS10065 WP_080790593.1 2302845..2304674(+) (rcrQ) [Bifidobacterium breve strain BR3]
ATGCCAAGAGGACCTATGGGCCGCGGAGGCGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCATGGCAAGCCGGTGCTCAATTCC
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
GAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCGCAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCCCGCATCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATTGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGCCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAAGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCAGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGCC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTGCAGGACGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTTGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGCTGCTGGCGGCGGGCGGCTTCTACGCGGATTTGTACAACAGCCAGTTCGCTTTGTCGGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.675

96.059

0.516

Multiple sequence alignment