Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SB85_RS06845 Genome accession   NZ_CP010409
Coordinates   1680934..1682319 (-) Length   461 a.a.
NCBI ID   WP_043092782.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675934..1687319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB85_RS06825 (SB85_06825) - 1676702..1678003 (+) 1302 WP_043092779.1 histidine-type phosphatase -
  SB85_RS06830 (SB85_06830) - 1678114..1679418 (+) 1305 WP_043092780.1 jacalin-like lectin -
  SB85_RS06835 - 1679549..1680424 (-) 876 WP_156117217.1 hypothetical protein -
  SB85_RS06840 (SB85_06840) - 1680474..1680839 (-) 366 Protein_1392 DUF805 domain-containing protein -
  SB85_RS06845 (SB85_06845) radA 1680934..1682319 (-) 1386 WP_043092782.1 DNA repair protein RadA Machinery gene
  SB85_RS06850 (SB85_06850) - 1682822..1684690 (-) 1869 WP_156117342.1 tetratricopeptide repeat protein -
  SB85_RS06855 (SB85_06855) - 1684839..1685441 (-) 603 WP_043092784.1 ATP-dependent Clp protease proteolytic subunit -
  SB85_RS06860 (SB85_06860) - 1685497..1686309 (+) 813 WP_043092785.1 sigma-70 family RNA polymerase sigma factor -
  SB85_RS06865 (SB85_06865) cyoD 1686416..1686754 (-) 339 WP_043092786.1 cytochrome o ubiquinol oxidase subunit IV -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48402.65 Da        Isoelectric Point: 7.4579

>NTDB_id=136941 SB85_RS06845 WP_043092782.1 1680934..1682319(-) (radA) [Xanthomonas sacchari strain R1]
MAKAKTAYVCGDCGAEYSKWQGQCVECGAWNTLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=136941 SB85_RS06845 WP_043092782.1 1680934..1682319(-) (radA) [Xanthomonas sacchari strain R1]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGACTGCGGCGCCGAGTACAGCAAGTGGCAGGGCCAGTGCGTCGAGTG
CGGCGCCTGGAACACGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGACGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTCGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGATCGGGTGCTGGGCGGCGGCCTGGTGGAAGGCGCGGTCGTGCTGATCGGTGGCGATCCGGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACCCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAATGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GCTGACCGCCGCGCCCGGTTCGGTGAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTACGCCAAGGAGACCGGCA
CCGCAGTGTTCCTGGTCGGCCACGTCACCAAGGAAGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGATTGAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTCTCCGGCGGCAGCG
CCCACCAACCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACGCGGCCGCTGATGGTGGAGGTGCAGGCGCTGGTGGAT
GCCTCGCCGCTGTCCAATCCGCGGCGGGTGGCGGTTGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCACGGCGGCATCGTGGTCGGCGACCAGGATGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAAACCGCGG
CCGATTTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCGGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAA
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGCTGCGCGAGGCCGCGACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCACGGTCAAGGGCATGGAGGTGATCGCGGTGGAGCGGCTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(88-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.024

100

0.49
  radA Streptococcus mitis SK321

43.355

99.566

0.432
  radA Streptococcus pneumoniae D39

42.888

99.132

0.425
  radA Streptococcus pneumoniae TIGR4

42.888

99.132

0.425
  radA Streptococcus mitis NCTC 12261

42.888

99.132

0.425
  radA Streptococcus pneumoniae R6

42.888

99.132

0.425
  radA Streptococcus pneumoniae Rx1

42.888

99.132

0.425

Multiple sequence alignment