Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SB24_RS18480 Genome accession   NZ_CP010406
Coordinates   3843596..3844204 (-) Length   202 a.a.
NCBI ID   WP_015417702.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3838596..3849204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS18460 (SB24_18460) - 3838832..3839530 (+) 699 WP_003153516.1 DnaD domain-containing protein -
  SB24_RS18465 (SB24_18465) nth 3839549..3840208 (+) 660 WP_007612187.1 endonuclease III -
  SB24_RS18470 (SB24_18470) - 3840205..3840696 (+) 492 WP_039254733.1 hypothetical protein -
  SB24_RS18475 (SB24_18475) - 3840774..3843557 (-) 2784 WP_039254735.1 PBP1A family penicillin-binding protein -
  SB24_RS18480 (SB24_18480) recU 3843596..3844204 (-) 609 WP_015417702.1 Holliday junction resolvase RecU Machinery gene
  SB24_RS18485 (SB24_18485) - 3844246..3845208 (+) 963 WP_015417701.1 DUF2515 domain-containing protein -
  SB24_RS18490 (SB24_18490) sspM 3845252..3845356 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  SB24_RS18495 (SB24_18495) - 3845563..3845808 (+) 246 WP_012117836.1 DUF5446 family protein -
  SB24_RS18500 (SB24_18500) - 3845854..3846222 (+) 369 WP_007409492.1 YppE family protein -
  SB24_RS18505 (SB24_18505) - 3846261..3846443 (-) 183 WP_003153532.1 YppF family protein -
  SB24_RS18510 (SB24_18510) - 3846630..3847064 (+) 435 WP_007409493.1 YppG family protein -
  SB24_RS18515 (SB24_18515) - 3847094..3847507 (-) 414 WP_039254739.1 hypothetical protein -
  SB24_RS18520 (SB24_18520) - 3847646..3848152 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23675.77 Da        Isoelectric Point: 9.5779

>NTDB_id=136925 SB24_RS18480 WP_015417702.1 3843596..3844204(-) (recU) [Bacillus sp. Pc3]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLHNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=136925 SB24_RS18480 WP_015417702.1 3843596..3844204(-) (recU) [Bacillus sp. Pc3]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCATAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment