Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QQ24_RS21645 Genome accession   NZ_CP012868
Coordinates   4376933..4377409 (+) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4371933..4382409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ24_RS21610 (QQ24_21610) ykfA 4372705..4373568 (+) 864 WP_001065553.1 GTPase family protein -
  QQ24_RS21615 (QQ24_21615) yafZ 4373660..4374481 (+) 822 WP_000197389.1 DUF932 domain-containing protein -
  QQ24_RS25840 - 4374698..4374889 (+) 192 Protein_4154 DeoR family transcriptional regulator -
  QQ24_RS25845 (QQ24_21620) ypjK 4374885..4375112 (+) 228 WP_001548158.1 protein YpjK -
  QQ24_RS25850 (QQ24_21625) yafY 4375112..4375555 (+) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  QQ24_RS21630 (QQ24_21630) ykfB 4375578..4376045 (+) 468 WP_001547765.1 protein YkfB -
  QQ24_RS21635 (QQ24_21635) ykfF 4376122..4376361 (+) 240 WP_000194654.1 DUF905 family protein -
  QQ24_RS21640 (QQ24_21640) yafX 4376459..4376917 (+) 459 WP_000211838.1 antirestriction protein -
  QQ24_RS21645 (QQ24_21645) radC 4376933..4377409 (+) 477 WP_000811693.1 RadC family protein Machinery gene
  QQ24_RS24765 ykfH 4377418..4377639 (+) 222 WP_000691994.1 DUF987 domain-containing protein -
  QQ24_RS21650 (QQ24_21650) yafW 4377658..4377975 (+) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  QQ24_RS21655 (QQ24_21655) ykfI 4377996..4378337 (+) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  QQ24_RS21665 (QQ24_21665) proA 4378909..4380162 (-) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  QQ24_RS21670 (QQ24_21670) proB 4380174..4381277 (-) 1104 WP_001285288.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=136924 QQ24_RS21645 WP_000811693.1 4376933..4377409(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=136924 QQ24_RS21645 WP_000811693.1 4376933..4377409(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment