Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | SB24_RS17205 | Genome accession | NZ_CP010406 |
| Coordinates | 3560403..3560669 (+) | Length | 88 a.a. |
| NCBI ID | WP_050515801.1 | Uniprot ID | - |
| Organism | Bacillus sp. Pc3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3555403..3565669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SB24_RS17185 (SB24_17185) | - | 3555672..3556973 (-) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| SB24_RS17190 (SB24_17190) | - | 3557119..3558069 (+) | 951 | WP_015417820.1 | magnesium transporter CorA family protein | - |
| SB24_RS17195 (SB24_17195) | comGA | 3558262..3559332 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SB24_RS17200 (SB24_17200) | comGB | 3559319..3560356 (+) | 1038 | WP_015417819.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SB24_RS17205 (SB24_17205) | comGC | 3560403..3560669 (+) | 267 | WP_050515801.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SB24_RS17210 (SB24_17210) | comGD | 3560659..3561096 (+) | 438 | WP_015417817.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SB24_RS17215 (SB24_17215) | comGE | 3561080..3561394 (+) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| SB24_RS17220 (SB24_17220) | comGF | 3561303..3561803 (+) | 501 | WP_257738552.1 | competence type IV pilus minor pilin ComGF | - |
| SB24_RS17225 (SB24_17225) | comGG | 3561804..3562181 (+) | 378 | WP_015417814.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SB24_RS17230 (SB24_17230) | - | 3562238..3562417 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| SB24_RS17235 (SB24_17235) | - | 3562457..3562786 (-) | 330 | WP_039254490.1 | DUF3889 domain-containing protein | - |
| SB24_RS17240 (SB24_17240) | tapA | 3563045..3563716 (+) | 672 | WP_031378945.1 | amyloid fiber anchoring/assembly protein TapA | - |
| SB24_RS17245 (SB24_17245) | - | 3563688..3564272 (+) | 585 | WP_015240205.1 | signal peptidase I | - |
| SB24_RS17250 (SB24_17250) | - | 3564337..3565122 (+) | 786 | WP_007408329.1 | TasA family protein | - |
| SB24_RS17255 (SB24_17255) | sinR | 3565170..3565505 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9749.37 Da Isoelectric Point: 6.2027
>NTDB_id=136918 SB24_RS17205 WP_050515801.1 3560403..3560669(+) (comGC) [Bacillus sp. Pc3]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTVCPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTVCPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=136918 SB24_RS17205 WP_050515801.1 3560403..3560669(+) (comGC) [Bacillus sp. Pc3]
ATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGTCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGTCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
76.056 |
80.682 |
0.614 |