Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SB24_RS16950 Genome accession   NZ_CP010406
Coordinates   3513631..3514398 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus sp. Pc3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3508631..3519398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS16925 (SB24_16925) - 3508914..3511046 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  SB24_RS16930 (SB24_16930) ybeY 3511047..3511520 (+) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  SB24_RS16935 (SB24_16935) - 3511501..3511875 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  SB24_RS16940 (SB24_16940) - 3511999..3512409 (+) 411 WP_003152976.1 cytidine deaminase -
  SB24_RS16945 (SB24_16945) era 3512390..3513295 (+) 906 WP_007408285.1 GTPase Era -
  SB24_RS19780 - 3513451..3513594 (+) 144 WP_007408286.1 YqzL family protein -
  SB24_RS16950 (SB24_16950) recO 3513631..3514398 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  SB24_RS16955 (SB24_16955) glyQ 3514700..3515587 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  SB24_RS16960 (SB24_16960) glyS 3515580..3517619 (+) 2040 WP_015417840.1 glycine--tRNA ligase subunit beta -
  SB24_RS16965 (SB24_16965) ccpN 3517720..3518358 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  SB24_RS16970 (SB24_16970) - 3518384..3519196 (+) 813 WP_015417839.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=136915 SB24_RS16950 WP_007408287.1 3513631..3514398(+) (recO) [Bacillus sp. Pc3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=136915 SB24_RS16950 WP_007408287.1 3513631..3514398(+) (recO) [Bacillus sp. Pc3]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATATGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment