Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SB24_RS09510 Genome accession   NZ_CP010406
Coordinates   2009369..2009659 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004369..2014659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS09495 (SB24_09495) - 2004591..2005916 (-) 1326 WP_099686894.1 G5 and 3D domain-containing protein -
  SB24_RS09500 (SB24_09500) - 2006051..2006818 (-) 768 WP_039253034.1 TatD family hydrolase -
  SB24_RS09505 (SB24_09505) metG 2006895..2008886 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  SB24_RS09510 (SB24_09510) abrB 2009369..2009659 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  SB24_RS09515 (SB24_09515) rsmI 2009709..2010590 (-) 882 WP_039253039.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SB24_RS09520 (SB24_09520) - 2010565..2010864 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  SB24_RS09525 (SB24_09525) - 2010851..2011594 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SB24_RS09530 (SB24_09530) yabA 2011655..2012014 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  SB24_RS09535 (SB24_09535) ricT 2012029..2012856 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  SB24_RS09540 (SB24_09540) holB 2012859..2013848 (-) 990 WP_033575250.1 DNA polymerase III subunit delta' -
  SB24_RS09545 (SB24_09545) - 2013860..2014300 (-) 441 WP_004264730.1 DUF327 family protein -
  SB24_RS09550 (SB24_09550) darA 2014313..2014642 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=136884 SB24_RS09510 WP_169510469.1 2009369..2009659(+) (abrB) [Bacillus sp. Pc3]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=136884 SB24_RS09510 WP_169510469.1 2009369..2009659(+) (abrB) [Bacillus sp. Pc3]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCAATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment