Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RT44_RS07845 Genome accession   NZ_CP010402
Coordinates   1599185..1599631 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GR2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594185..1604631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RT44_RS07815 (RT44_07810) gcvPA 1595111..1596457 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RT44_RS07820 (RT44_07815) gcvT 1596477..1597568 (-) 1092 WP_000093353.1 glycine cleavage system aminomethyltransferase GcvT -
  RT44_RS07825 (RT44_07820) - 1597727..1598251 (-) 525 WP_001015123.1 shikimate kinase -
  RT44_RS07830 (RT44_07825) - 1598241..1598387 (-) 147 WP_001789879.1 hypothetical protein -
  RT44_RS07835 (RT44_07830) comGF 1598484..1598981 (-) 498 WP_029263717.1 competence type IV pilus minor pilin ComGF Machinery gene
  RT44_RS07840 (RT44_07835) comGE 1598899..1599198 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  RT44_RS07845 (RT44_07840) comGD 1599185..1599631 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  RT44_RS07850 (RT44_07845) comGC 1599609..1599920 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RT44_RS07855 (RT44_07850) comGB 1599934..1601004 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  RT44_RS07860 (RT44_07855) comGA 1600976..1601950 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RT44_RS07865 (RT44_07860) - 1602002..1602625 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RT44_RS07870 (RT44_07865) - 1602622..1602951 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RT44_RS07875 (RT44_07870) - 1602951..1603937 (-) 987 WP_000161312.1 ROK family glucokinase -
  RT44_RS07880 (RT44_07875) - 1603934..1604137 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=136829 RT44_RS07845 WP_001788899.1 1599185..1599631(-) (comGD) [Staphylococcus aureus strain GR2]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=136829 RT44_RS07845 WP_001788899.1 1599185..1599631(-) (comGD) [Staphylococcus aureus strain GR2]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment