Detailed information NTG0136820

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: AOY38_RS10375
• Genome accession: NZ_CP012832
• Coordinates: 2202048..2203262 (+)
• Length: 404 a.a.
• NCBI ID: WP_014407124.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. GT-G
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2197048..2208262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY38_RS10365 (AOY38_10355)	-	2199038..2200441 (-)	1404	WP_010873186.1	efflux RND transporter periplasmic adaptor subunit	-
AOY38_RS10370 (AOY38_10360)	pilT	2200835..2201944 (+)	1110	WP_010873187.1	type IV pilus twitching motility protein PilT	Machinery gene
AOY38_RS10375 (AOY38_10365)	pilC	2202048..2203262 (+)	1215	WP_014407124.1	type II secretion system F family protein	Machinery gene
AOY38_RS10380 (AOY38_10370)	-	2203664..2204341 (+)	678	WP_010873190.1	ATP-dependent Clp protease proteolytic subunit	-
AOY38_RS10385 (AOY38_10375)	-	2204441..2205049 (+)	609	WP_010873191.1	ATP-dependent Clp protease proteolytic subunit	-
AOY38_RS10390 (AOY38_10380)	-	2205260..2206585 (-)	1326	WP_010873192.1	aminopeptidase P N-terminal domain-containing protein	-
AOY38_RS10395 (AOY38_10385)	-	2206668..2207648 (-)	981	WP_010873193.1	S-methyl-5'-thioadenosine phosphorylase	-
AOY38_RS10400 (AOY38_10390)	-	2207593..2207829 (-)	237	WP_010873194.1	DUF3134 domain-containing protein	-
AOY38_RS10405 (AOY38_10395)	-	2207896..2208051 (-)	156	WP_010873195.1	ribbon-helix-helix domain-containing protein	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43793.74 Da
• Isoelectric Point: 5.2932

>NTDB_id=136820 AOY38_RS10375 WP_014407124.1 2202048..2203262(+) (pilC) [Synechocystis sp. PCC 6803 substr. GT-G]
MATFVAQVKDRKGKTTKAKVEAMSPEQARTILRQQYAAIGPIKPAGGEINLEFLENLLNNVSVKDKAVFSRQFSVMINAG
VAIVRCLGVLSEQCPNPKLKRALTGISGEVQQGTNLSEAMGKYPECFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDMAR
LQNQIKSAMAYPVAVGFLAVVAFLGMTIFLIPVFAGIFDDLGGELPALTKFMVGLSNFLRSPMAVIPVIVIVVAVFLFKK
YYGTYAGRRQVDAVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVCNTVPNKVISDAIAGAISEIQQGGMM
SLALQQSKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVGTILLSMYLPMFAIF
DQLG

Nucleotide

• Length: 1215 bp

>NTDB_id=136820 AOY38_RS10375 WP_014407124.1 2202048..2203262(+) (pilC) [Synechocystis sp. PCC 6803 substr. GT-G]
ATGGCTACGTTTGTCGCTCAAGTTAAAGATCGTAAAGGTAAAACCACCAAAGCCAAGGTGGAAGCCATGAGTCCAGAACA
GGCTCGTACCATCCTCCGCCAACAATACGCGGCGATCGGCCCCATTAAGCCAGCCGGAGGGGAAATAAACCTCGAATTCC
TGGAAAATTTACTTAACAACGTTAGTGTCAAGGACAAAGCGGTTTTCTCCCGACAGTTTTCCGTCATGATCAACGCTGGC
GTGGCGATCGTTCGTTGTTTGGGGGTGCTGTCGGAACAATGTCCTAATCCCAAACTGAAAAGGGCATTAACGGGTATTAG
TGGGGAAGTTCAACAGGGCACTAACCTTTCTGAAGCCATGGGCAAATATCCCGAATGTTTTGATGACCTCTACGTCAGCA
TGGTGGAAGCAGGGGAAACGGGGGGGGTTTTAGACGAAGTTCTCAACCGACTTTCCAAACTGCTGGAAGACATGGCCCGT
CTGCAAAACCAAATTAAATCCGCCATGGCTTATCCGGTGGCAGTAGGTTTCTTGGCGGTGGTGGCTTTTCTCGGTATGAC
CATCTTCCTCATCCCTGTCTTTGCGGGAATTTTTGATGACCTGGGGGGAGAACTGCCCGCTTTAACCAAATTTATGGTCG
GCCTAAGTAACTTTTTAAGAAGTCCAATGGCCGTCATCCCCGTAATTGTTATTGTGGTTGCCGTTTTTCTATTCAAAAAA
TATTACGGAACCTATGCTGGGCGGCGACAAGTCGATGCGGTGATGTTGAAACTACCTTTGTTTGGTCCCCTGAATGAAAA
AACCGCTGTAGCTAGGTTTTGCCGGGTATTTGGCACCCTTACCCGTTCGGGGGTTCCCATTATTCAGTCTTTGGAAATTG
TTTGTAATACTGTGCCCAATAAAGTGATTTCCGATGCGATCGCCGGGGCTATTAGTGAAATTCAACAGGGGGGCATGATG
AGTTTGGCTCTGCAACAAAGTAAGGTTTTCCCCTCTTTGGCGATTCAAATGATTAGTATTGGGGAAGAAACGGGGGAACT
GGATGCCATGATGATGAAAGTGGCGGACTTCTATGAAGACGAAGTAGAACAAACCGTCAAAGCGTTGACTAGTATTATAG
AACCAGCTATGATGGTGCTGATTGCCGGTATGGTCGGGACAATTTTGCTTTCCATGTATCTACCCATGTTTGCCATCTTT
GATCAGTTAGGTTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	40.64	100	0.408