Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   RT44_RS00295 Genome accession   NZ_CP010402
Coordinates   61542..63170 (-) Length   542 a.a.
NCBI ID   WP_054170558.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GR2     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 39686..69712 61542..63170 within 0
IScluster/Tn 50233..60586 61542..63170 flank 956


Gene organization within MGE regions


Location: 39686..69712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RT44_RS00170 (RT44_00170) mecA 39686..41695 (-) 2010 WP_078152955.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  RT44_RS00175 (RT44_00175) - 41792..42778 (+) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  RT44_RS00180 (RT44_00180) - 42750..43010 (+) 261 WP_001549961.1 type I restriction enzyme endonuclease domain-containing protein -
  RT44_RS00185 (RT44_00185) - 43001..44608 (-) 1608 Protein_33 IS1182 family transposase -
  RT44_RS00190 (RT44_00190) - 44660..45166 (-) 507 WP_001092189.1 DUF1643 domain-containing protein -
  RT44_RS00195 (RT44_00195) - 45181..45492 (-) 312 WP_000700851.1 DUF960 family protein -
  RT44_RS00200 (RT44_00200) - 45579..45929 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RT44_RS00205 (RT44_00205) - 46346..47161 (-) 816 WP_000164963.1 AAA family ATPase -
  RT44_RS00210 (RT44_00210) - 47154..48596 (-) 1443 WP_000790705.1 Mu transposase C-terminal domain-containing protein -
  RT44_RS00215 (RT44_00215) - 48568..49161 (-) 594 WP_000690628.1 recombinase family protein -
  RT44_RS00220 (RT44_00220) - 49368..49949 (+) 582 WP_001124173.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  RT44_RS14290 - 50233..51837 (+) 1605 Protein_41 IS1182-like element IS1182 family transposase -
  RT44_RS00235 (RT44_00235) - 51964..52209 (+) 246 WP_000567888.1 single-stranded DNA-binding protein -
  RT44_RS00240 (RT44_00240) - 52312..53181 (+) 870 WP_000228166.1 nucleotidyltransferase domain-containing protein -
  RT44_RS00245 (RT44_00245) - 53162..53896 (+) 735 WP_000662263.1 class I SAM-dependent methyltransferase -
  RT44_RS00250 (RT44_00250) - 53929..54837 (+) 909 WP_001255866.1 aminoglycoside nucleotidyltransferase ANT(6)-Ia -
  RT44_RS00255 (RT44_00255) sat4 54834..55376 (+) 543 WP_000627290.1 streptothricin N-acetyltransferase Sat4 -
  RT44_RS00260 (RT44_00260) aph(3')-IIIa 55469..56263 (+) 795 WP_001096887.1 aminoglycoside O-phosphotransferase APH(3')-IIIa -
  RT44_RS15240 - 56539..56670 (+) 132 Protein_48 HTH domain-containing protein -
  RT44_RS15245 - 56746..57491 (+) 746 Protein_49 WYL domain-containing protein -
  RT44_RS00275 (RT44_00275) - 57602..58261 (+) 660 WP_000802831.1 RibD family protein -
  RT44_RS14305 - 58982..60586 (-) 1605 Protein_51 IS1182-like element IS1182 family transposase -
  RT44_RS00290 (RT44_00290) - 60745..61176 (+) 432 Protein_52 hypothetical protein -
  RT44_RS14980 - 61177..61260 (+) 84 Protein_53 ATP-binding protein -
  RT44_RS00295 (RT44_00295) ccrB 61542..63170 (-) 1629 WP_054170558.1 recombinase family protein Machinery gene
  RT44_RS00300 (RT44_00300) ccrA 63192..64541 (-) 1350 WP_000815640.1 recombinase family protein Machinery gene
  RT44_RS00305 (RT44_00305) - 64775..66568 (-) 1794 WP_000079473.1 DUF927 domain-containing protein -
  RT44_RS00310 (RT44_00310) - 66568..66864 (-) 297 WP_000273823.1 single-stranded DNA-binding protein -
  RT44_RS00315 (RT44_00315) - 67057..68103 (-) 1047 WP_001042023.1 hypothetical protein -
  RT44_RS00320 (RT44_00320) - 68558..69712 (+) 1155 WP_000912116.1 ATP-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62638.79 Da        Isoelectric Point: 9.7970

>NTDB_id=136810 RT44_RS00295 WP_054170558.1 61542..63170(-) (ccrB) [Staphylococcus aureus strain GR2]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAAPHHDIAYKQQQYD
EVQIKINNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=136810 RT44_RS00295 WP_054170558.1 61542..63170(-) (ccrB) [Staphylococcus aureus strain GR2]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTATACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTGCTATGCCAAAGGACATGGCTATCGTAAAATTGCCAATGCATTGAATCACAAAGGATATGTCACTAAAA
AGGGGAAACCTTTCAGTATTAGTTCAATCACATACATCTTAGCTAACCCTTTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAGAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACTCTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACCTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGACTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

98.708

100

0.987

Multiple sequence alignment