Detailed information NTG0136779

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AO356_RS24345
• Genome accession: NZ_CP012831
• Coordinates: 5488306..5490849 (-)
• Length: 847 a.a.
• NCBI ID: WP_060741942.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain FW300-N2C3
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5483306..5495849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AO356_RS24325 (AO356_24300)	-	5483584..5484537 (-)	954	WP_060741938.1	MBL fold metallo-hydrolase	-
AO356_RS24330 (AO356_24305)	-	5485085..5485621 (-)	537	WP_060741939.1	toxin-antitoxin system YwqK family antitoxin	-
AO356_RS24335 (AO356_24310)	tssI	5485635..5487644 (-)	2010	WP_060741940.1	type VI secretion system tip protein VgrG	-
AO356_RS24340 (AO356_24315)	-	5487680..5488231 (-)	552	WP_225613510.1	hypothetical protein	-
AO356_RS24345 (AO356_24320)	clpC	5488306..5490849 (-)	2544	WP_060741942.1	type VI secretion system ATPase TssH	Regulator
AO356_RS24350 (AO356_24325)	tssG	5490851..5491876 (-)	1026	WP_060741943.1	type VI secretion system baseplate subunit TssG	-
AO356_RS24355 (AO356_24330)	tssF	5491840..5493630 (-)	1791	WP_060741944.1	type VI secretion system baseplate subunit TssF	-
AO356_RS24360 (AO356_24335)	tssE	5493614..5494057 (-)	444	WP_060741945.1	type VI secretion system baseplate subunit TssE	-
AO356_RS24365 (AO356_24340)	-	5494071..5494568 (-)	498	WP_046063980.1	Hcp family type VI secretion system effector	-

Sequence

Protein

• Length: 847 a.a.
• Molecular weight: 92368.55 Da
• Isoelectric Point: 5.5259

>NTDB_id=136779 AO356_RS24345 WP_060741942.1 5488306..5490849(-) (clpC) [Pseudomonas fluorescens strain FW300-N2C3]
MELASLIGRLNPDNRRALERAAQRCMQRSHHYVEIEHLLLELLDIEGGDFACLLPRFGLERDAVAAETNKALDLFKSGST
RTPALSAHTIGLLEDAVVQASVLGLDSIRSGLLLLALLDRDERRSLLLNSASSLLRIPRDALRAQLLEWTESSREHVAGV
RPAKPGEAPQKQDPVLDQYTQDLTADARNGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAA
GDVPPSLQEVTLRVLDLGLLQAGAGVKGEFEQRLKGVIDAVRSAEKPIILFIDEAHTLIGAGGAEGGSDAANLLKPALAR
GELRTLAATTWLEYKKYFEKDPALARRFQLVQVEEPDELTAVEMLRGVASKLEQHHGVQVLDAAIHEAVKLSHRYISGRQ
LPDKAISVLDTACARVALGQHDVPPPLESLRHRQNSLKDEVERLRREQATGLDHRERITLLEGESTSNVQAIRELETRWG
EEREAVRELLDTRRELLALSERADSEKADTEVDNRIDHLAAELLRLEAGLDAIRQDDPLVPEQVDSKTVAAVIAGWTGIP
VGKMLADEAHAVRTLGQRMGQRVMGQGTALNTIAQRLQAYRAGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGER
NLISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVV
DFKNTVMLATSNVGAELLLDTPVAQLGTDAFNEALHKVLLQAFRPAFLARMTVVAYRPLDEATLEGIVLAKLEKLRGRYK
AATGKQFEFDAGIVKAVLAKCSAAGARDVENVLMTQVTGKLAEWVLE

Nucleotide

• Length: 2544 bp

>NTDB_id=136779 AO356_RS24345 WP_060741942.1 5488306..5490849(-) (clpC) [Pseudomonas fluorescens strain FW300-N2C3]
ATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCCTGGAACGGGCCGCGCAACGCTGCATGCA
GCGCAGCCACCACTACGTGGAAATCGAACACCTGCTGTTGGAGTTGCTCGACATCGAGGGCGGTGACTTCGCCTGCCTGC
TGCCGCGTTTCGGCCTGGAACGTGACGCGGTGGCCGCGGAAACCAACAAGGCCCTGGACCTGTTCAAATCCGGCAGCACC
CGCACGCCCGCCCTGTCGGCGCACACCATCGGCCTGCTGGAAGATGCCGTGGTCCAGGCCAGCGTGTTGGGCCTGGACAG
CATTCGCTCCGGGCTGTTGCTGCTGGCACTGCTGGACCGTGATGAGCGCCGCAGCCTGCTGCTCAACAGTGCCTCGTCGC
TGCTGCGCATTCCCCGCGACGCCCTGCGCGCCCAGCTATTGGAATGGACCGAAAGCTCCCGTGAGCATGTCGCTGGCGTG
CGCCCGGCCAAGCCCGGCGAGGCGCCACAGAAACAGGACCCGGTGCTGGACCAGTACACCCAGGACCTGACCGCCGACGC
CCGGAACGGTCGCATCGACCCCATCGTCGGCCGCGACGGCGAAATCCGTCAGTGCATCGACATCCTGCTCAGGCGCCGGC
AGAACAACCCGATCCTGGTGGGCGCGCCGGGTGTCGGCAAGACCGCCGTGGTGGAAGGCCTGGCCCTGCGGATCGCCGCC
GGGGATGTGCCGCCATCGCTGCAGGAAGTCACCCTGCGCGTCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAA
GGGCGAATTCGAACAACGCCTCAAGGGCGTGATCGACGCGGTACGCAGCGCCGAAAAACCGATCATCCTGTTCATTGACG
AAGCCCACACGCTGATCGGCGCCGGCGGTGCGGAAGGCGGCAGCGATGCAGCTAATCTGCTCAAGCCGGCCCTGGCCCGG
GGCGAACTGCGCACCCTGGCCGCCACCACCTGGCTGGAATACAAAAAATACTTCGAGAAAGACCCGGCCCTGGCCCGCCG
CTTCCAGTTGGTGCAGGTCGAAGAACCGGACGAACTCACCGCCGTGGAAATGCTCCGCGGCGTGGCGAGCAAACTGGAAC
AGCACCACGGCGTGCAAGTGTTGGACGCCGCCATCCACGAGGCGGTGAAACTGTCCCACCGCTACATCTCCGGGCGGCAG
TTGCCGGACAAAGCCATCAGCGTGCTCGACACCGCCTGCGCCCGTGTCGCCCTCGGTCAACACGACGTGCCGCCGCCGCT
GGAAAGCCTGCGCCACCGGCAGAACAGCCTCAAGGATGAAGTCGAACGCCTGCGCCGCGAGCAGGCCACTGGCCTGGATC
ACCGCGAGCGCATCACCCTGCTGGAGGGCGAATCGACCAGCAATGTGCAGGCCATCCGCGAGCTGGAAACCCGCTGGGGC
GAAGAGCGCGAAGCCGTACGCGAACTGCTCGACACCCGGCGCGAACTGCTGGCCCTGAGCGAACGGGCCGACAGTGAAAA
AGCCGACACCGAGGTCGATAACCGCATCGACCACCTGGCCGCCGAACTGCTGCGCCTGGAAGCCGGCCTCGATGCCATTC
GCCAGGACGATCCGCTGGTGCCCGAACAGGTGGACAGCAAGACCGTCGCCGCCGTGATCGCCGGCTGGACCGGCATCCCG
GTCGGCAAGATGCTCGCCGACGAAGCCCATGCCGTGCGCACCCTCGGCCAGCGCATGGGCCAGCGGGTCATGGGCCAGGG
CACGGCGTTGAACACCATCGCCCAACGCCTGCAAGCCTACCGCGCCGGCCTCACCGACCCACAGAAACCGGTCGGCGTGT
TCCTGCTGGTGGGCCCCACCGGCGTGGGCAAGACCGAAACCGCCTACGCCTTGGCCGATGCCTTGTACGGCGGTGAACGC
AACCTGATCAGCATCAACCTCTCGGAGTACCAGGAAGCCCACACCGTCAGCCAACTCAAAGGCGCCCCGCCCGGCTACGT
CGGCTACGGCAGCGGCGGCGTGCTCACCGAAGCGGTGCGGCGCAAACCCTATTCCGTGGTGTTGCTGGATGAAATCGAAA
AGGCCCACCCGGACGTGCTCGAAGCCTTCTACAACGTCTTTGACAAAGGCCTGATGGAAGACGGCACCGGCCTGGTGGTG
GACTTCAAGAACACCGTGATGCTCGCCACCAGCAACGTCGGCGCCGAACTGCTACTGGACACGCCGGTGGCGCAACTGGG
CACCGACGCCTTCAACGAGGCCTTGCACAAGGTGCTGCTGCAAGCGTTCCGCCCGGCGTTTCTGGCGCGCATGACGGTGG
TGGCGTACCGGCCGCTGGATGAGGCGACGCTGGAAGGGATTGTGTTGGCGAAGCTGGAGAAATTGCGCGGGCGTTACAAG
GCGGCGACTGGCAAGCAGTTCGAATTCGATGCCGGGATCGTCAAGGCCGTGTTGGCCAAATGCAGCGCGGCGGGGGCACG
GGATGTCGAGAATGTGTTGATGACACAGGTGACAGGGAAGTTGGCGGAGTGGGTGTTGGAGTAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (21-72)

• AAA lid domain (AAA_lid_9) (360-451)

• ATPase family associated with various cellular activities (AAA) (AAA) (218-323)

• AAA domain (Cdc48 subfamily) (AAA_2) (609-773)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	36.671	100	0.372