Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AO356_RS22310 Genome accession   NZ_CP012831
Coordinates   4983916..4984920 (-) Length   334 a.a.
NCBI ID   WP_060741582.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4978916..4989920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS22290 (AO356_22265) - 4979064..4979924 (-) 861 WP_060741578.1 CAP domain-containing protein -
  AO356_RS22295 (AO356_22270) - 4980138..4981028 (-) 891 WP_237140829.1 EamA family transporter -
  AO356_RS22300 (AO356_22275) - 4981424..4982554 (+) 1131 WP_060741580.1 sensor histidine kinase -
  AO356_RS22305 (AO356_22280) - 4982651..4983742 (+) 1092 WP_060741581.1 SMP-30/gluconolactonase/LRE family protein -
  AO356_RS22310 (AO356_22285) cytR 4983916..4984920 (-) 1005 WP_060741582.1 LacI family DNA-binding transcriptional regulator Regulator
  AO356_RS22315 (AO356_22290) - 4985088..4986263 (+) 1176 WP_060741583.1 Gfo/Idh/MocA family protein -
  AO356_RS22320 (AO356_22295) - 4986227..4987339 (+) 1113 WP_109791092.1 sugar phosphate isomerase/epimerase family protein -
  AO356_RS22325 (AO356_22300) - 4987536..4988768 (+) 1233 WP_060741585.1 nucleoside permease -
  AO356_RS22330 (AO356_22305) - 4988787..4989443 (-) 657 WP_060741586.1 polysaccharide lyase family 7 protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35970.51 Da        Isoelectric Point: 8.3493

>NTDB_id=136773 AO356_RS22310 WP_060741582.1 4983916..4984920(-) (cytR) [Pseudomonas fluorescens strain FW300-N2C3]
MSNIREVARLAGVSVATVSRTLKSPERVLPETRDKVNAAVEQAGYRPNLMAVQFRSRRTGNLVILVPAIANTFFARVISG
AQQAAQAAGYRLLLCDTQGRAQIEREFAALVYAHQADGVIQLRASDPFESMPTGADSLPLVNACEVVKGAPYPTISLDNR
AAAQAMTEHLIGLGHRRIGIIKGPRSSPLTLDRVAGYQDALHQAGIAIDPSLICHGDFTLKAGDDGAGAMLALADRPSAL
FCENDEMAIGALRRIKRMGLRVPEDISLVGFDDIPFAAYCDPPLTTISQPAEMFGQKAVQMLIALIEKKPIAERHVVLPF
ELTVRGSTAPRARQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=136773 AO356_RS22310 WP_060741582.1 4983916..4984920(-) (cytR) [Pseudomonas fluorescens strain FW300-N2C3]
TTGTCCAACATTCGTGAGGTGGCCCGGCTGGCGGGTGTTTCGGTGGCCACGGTGTCCAGAACCCTGAAATCGCCCGAGCG
GGTACTCCCCGAAACACGGGACAAGGTCAACGCGGCGGTGGAACAGGCCGGCTATCGGCCCAATCTGATGGCGGTGCAAT
TTCGCTCCCGCCGGACCGGCAACCTGGTGATCCTGGTGCCGGCCATCGCCAACACGTTTTTCGCCCGGGTCATCAGTGGC
GCGCAACAGGCGGCACAGGCGGCGGGTTATCGATTGCTGTTGTGCGACACCCAGGGCCGGGCGCAGATCGAGCGGGAATT
CGCCGCCCTGGTCTACGCCCACCAGGCCGACGGCGTGATCCAGTTGCGTGCCAGCGATCCGTTCGAATCGATGCCCACTG
GCGCCGACAGCCTGCCGCTGGTCAACGCCTGCGAAGTGGTCAAGGGTGCCCCCTACCCGACCATCAGCCTCGACAACCGG
GCTGCTGCCCAGGCCATGACCGAACACCTGATCGGTCTCGGCCATCGCCGCATCGGCATCATCAAGGGACCGCGCAGCAG
CCCCCTGACCCTGGACCGCGTGGCCGGCTACCAGGATGCCCTGCACCAGGCCGGCATCGCCATCGACCCCAGCCTGATCT
GCCATGGCGACTTCACCTTGAAGGCCGGTGACGACGGTGCCGGGGCGATGCTGGCGTTGGCCGATCGCCCCAGTGCGCTG
TTCTGTGAAAACGACGAAATGGCCATCGGCGCGCTCAGGCGCATCAAGCGAATGGGCCTGCGAGTGCCCGAGGACATTTC
CCTGGTGGGCTTTGACGACATCCCGTTCGCCGCCTACTGCGACCCGCCCCTGACGACCATTTCGCAGCCTGCCGAGATGT
TTGGGCAAAAAGCGGTGCAGATGCTGATTGCCCTGATCGAGAAAAAGCCGATTGCCGAACGGCATGTGGTGTTGCCGTTT
GAGTTGACGGTGCGGGGCAGTACGGCCCCTAGAGCCAGACAGTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(167-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

43.582

100

0.437
  cytR Vibrio parahaemolyticus RIMD 2210633

42.814

100

0.428

Multiple sequence alignment