Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   RU84_RS02280 Genome accession   NZ_CP010397
Coordinates   473575..474459 (+) Length   294 a.a.
NCBI ID   WP_029424144.1    Uniprot ID   A0AAX0TX93
Organism   Acinetobacter baumannii strain 6200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468575..479459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU84_RS02255 (RU84_02255) - 468973..470220 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  RU84_RS02260 (RU84_02260) wrbA 470508..471101 (+) 594 WP_029424142.1 NAD(P)H:quinone oxidoreductase -
  RU84_RS02265 (RU84_02265) - 471154..471729 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  RU84_RS02270 (RU84_02270) - 471802..472515 (-) 714 WP_032050371.1 DUF3108 domain-containing protein -
  RU84_RS02275 (RU84_02275) - 472673..473344 (-) 672 WP_001193961.1 hypothetical protein -
  RU84_RS02280 (RU84_02280) tonB2 473575..474459 (+) 885 WP_029424144.1 energy transducer TonB Machinery gene
  RU84_RS02285 (RU84_02285) ybeY 474549..475025 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  RU84_RS02290 (RU84_02290) - 475035..476123 (-) 1089 WP_000122983.1 PhoH family protein -
  RU84_RS02295 (RU84_02295) miaB 476161..477612 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33545.40 Da        Isoelectric Point: 9.0947

>NTDB_id=136770 RU84_RS02280 WP_029424144.1 473575..474459(+) (tonB2) [Acinetobacter baumannii strain 6200]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=136770 RU84_RS02280 WP_029424144.1 473575..474459(+) (tonB2) [Acinetobacter baumannii strain 6200]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment