Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AO356_RS17910 Genome accession   NZ_CP012831
Coordinates   4036033..4037469 (+) Length   478 a.a.
NCBI ID   WP_060740879.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4031033..4042469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS17890 (AO356_17865) - 4031303..4032466 (-) 1164 WP_060740875.1 DUF4350 domain-containing protein -
  AO356_RS17895 (AO356_17870) - 4032463..4034004 (-) 1542 WP_060740876.1 DUF4129 domain-containing protein -
  AO356_RS17900 (AO356_17875) - 4033991..4034965 (-) 975 WP_060740877.1 stage II sporulation protein M -
  AO356_RS17905 (AO356_17880) - 4034962..4035687 (-) 726 WP_060740878.1 RDD family protein -
  AO356_RS17910 (AO356_17885) sbcB 4036033..4037469 (+) 1437 WP_060740879.1 exodeoxyribonuclease I Machinery gene
  AO356_RS17915 (AO356_17890) mvaT 4037552..4037929 (-) 378 WP_003205091.1 histone-like nucleoid-structuring protein MvaT -
  AO356_RS17920 (AO356_17895) purU 4038234..4039082 (+) 849 WP_060740880.1 formyltetrahydrofolate deformylase -
  AO356_RS32845 - 4039140..4039313 (+) 174 WP_170842278.1 hypothetical protein -
  AO356_RS17925 (AO356_17900) - 4039318..4040313 (-) 996 WP_060740881.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  AO356_RS17930 (AO356_17905) - 4040310..4041077 (-) 768 WP_060740882.1 DUF2334 domain-containing protein -
  AO356_RS17935 (AO356_17910) - 4041094..4042185 (-) 1092 WP_081015378.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 55243.57 Da        Isoelectric Point: 5.3818

>NTDB_id=136759 AO356_RS17910 WP_060740879.1 4036033..4037469(+) (sbcB) [Pseudomonas fluorescens strain FW300-N2C3]
MTSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCQPSDDILPHPAACAITGITPTCLAEKGLSEADFMTR
VHGHLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDLVRAAYALRPQGIVWPQEDGRVSLKLER
LTAANGIDHGQAHDALSDVRATIALARLVRQQQPRLYDWLFQLRSKQKVMDQIRLLQPMVHISGRFSAARNYIGVVLPLA
WHPKNRNALIVCDLHLDPQGLLDHDAETLRQRLYTRREELLEGELPVPLKLIHINKCPVVAPLSVLRVEDQQRLELDMES
YQQRALRLTDAQKVWQDKLQAIYGREDFTASEDPEQQLYAGFLGDRDRRLCEQVRMADPAQLAQAQWPFDDERLPELLFR
YRARNFPDTLNPEEQGRWRVFCQQRLSAPEWGAPNTLQSFDEAMGEWLAQSTPMQREVLVEWQGYSQQLRKRLSLESQ

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=136759 AO356_RS17910 WP_060740879.1 4036033..4037469(+) (sbcB) [Pseudomonas fluorescens strain FW300-N2C3]
GTGACTTCCATCTTCTGGTACGACTACGAAACCACCGGCATCAACCCGCGTTGCGACCGGCCCTTGCAGGTGGCGGGTAT
CCGTACCGATTTCGAGCTCAATGAAATCGACGAACCGGTGAATCTGTATTGCCAGCCCAGCGATGACATCCTGCCGCATC
CGGCGGCCTGTGCGATTACCGGCATCACCCCGACATGCCTGGCCGAGAAAGGCTTGAGCGAAGCCGATTTCATGACCCGT
GTCCACGGGCACCTGGCCGCGCCCGGTACCTGTGGCGCCGGCTACAACACCCTGCGTTTCGACGATGAAATGACCCGCTA
CAGCCTCTATCGGAATTTCTTCGACCCGTACGCACGGGAGTGGCAGGGCGGCAACAGCCGCTGGGACTTGATCGACCTGG
TGCGCGCGGCCTATGCGCTACGCCCGCAAGGCATTGTCTGGCCGCAGGAGGACGGTCGCGTCAGCCTCAAGCTCGAACGC
CTGACCGCCGCCAATGGCATCGATCATGGCCAGGCCCACGATGCGTTGTCGGACGTACGCGCGACCATCGCCCTGGCCCG
CCTGGTCCGTCAGCAGCAGCCGCGGCTCTACGACTGGCTGTTCCAGTTGCGCAGCAAGCAGAAAGTGATGGACCAGATCC
GCCTGCTGCAGCCGATGGTGCATATTTCCGGTCGCTTCTCGGCGGCGCGCAACTACATCGGCGTGGTATTGCCGTTGGCC
TGGCACCCGAAAAACCGCAACGCCCTGATTGTCTGCGACCTGCACCTGGACCCCCAGGGCCTGTTGGACCATGACGCCGA
AACCCTGCGCCAGCGTTTGTATACCCGCCGTGAAGAACTGCTCGAAGGTGAGTTGCCGGTGCCGCTCAAGCTTATCCATA
TCAACAAATGCCCGGTGGTCGCGCCGTTGTCGGTGCTGCGCGTCGAGGACCAGCAGCGGCTGGAACTGGACATGGAGAGC
TATCAACAGCGCGCATTGCGGCTAACTGACGCACAGAAAGTTTGGCAGGATAAACTTCAGGCTATTTATGGCCGCGAGGA
TTTCACCGCCAGCGAGGATCCCGAGCAACAGTTATACGCGGGCTTCTTGGGCGATCGCGATCGGCGTTTATGTGAACAAG
TGCGCATGGCGGACCCGGCGCAATTGGCGCAAGCGCAATGGCCTTTCGATGATGAGCGTCTGCCGGAACTATTGTTCCGA
TATCGTGCACGCAACTTTCCAGACACCTTGAATCCCGAAGAGCAAGGGCGCTGGAGAGTTTTCTGTCAACAACGTCTGTC
CGCCCCGGAATGGGGCGCGCCTAATACCTTGCAAAGTTTTGACGAGGCGATGGGAGAGTGGCTGGCCCAGTCTACGCCGA
TGCAGCGAGAAGTACTCGTGGAGTGGCAGGGCTACAGCCAGCAATTGCGCAAACGTTTAAGCCTTGAATCGCAATGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(6-185)

Exonuclease C-terminal (ExoI_SH3)

(204-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

48.471

88.912

0.431

Multiple sequence alignment