Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RU84_RS01455 Genome accession   NZ_CP010397
Coordinates   312733..314898 (+) Length   721 a.a.
NCBI ID   WP_032050295.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 6200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307733..319898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU84_RS01435 (RU84_01435) pilM 309691..310749 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RU84_RS01440 (RU84_01440) pilN 310749..311390 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RU84_RS01445 (RU84_01445) pilO 311387..312127 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RU84_RS01450 (RU84_01450) pilP 312138..312665 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RU84_RS01455 (RU84_01455) pilQ 312733..314898 (+) 2166 WP_032050295.1 type IV pilus secretin PilQ family protein Machinery gene
  RU84_RS01460 (RU84_01460) aroK 314910..315479 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RU84_RS01465 (RU84_01465) aroB 315508..316590 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  RU84_RS01470 (RU84_01470) - 316606..317481 (+) 876 WP_029424116.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77900.29 Da        Isoelectric Point: 6.6779

>NTDB_id=136759 RU84_RS01455 WP_032050295.1 312733..314898(+) (pilQ) [Acinetobacter baumannii strain 6200]
MNHVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDDRRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGVGVITIQSSGSYEYMAYQAENKLTI
SLKHPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=136759 RU84_RS01455 WP_032050295.1 312733..314898(+) (pilQ) [Acinetobacter baumannii strain 6200]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAACATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATCCTTGATTTTGATAAGGCACAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCAAGTTCTGTAGATGTTACTTCAGATGACCGGCGCTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTCGAAGGCAATACTTTCATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCACAACCACAGGGAGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCGCGTCGCTTAAATGTAAATGATTTTGCAACCCCGGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGTTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTATCAGGCGGAGAATAAGCTCACGATC
AGTTTGAAACATCCCCAAGATAAAAATGTTACCTCTTTATATAAAACGCCAAATTATTCAGGAAATAAACTTTCATTAGA
CTTCCAAGATATTGAAGTACGCCGTGTGTTGCAATTACTTGCTGATTTTACAGGCATCAATATGGTAGCTGCCGATAGTG
TACAAGGTAATATCACACTACGTTTAAAAGATGTACCTTGGGATCAGGCTCTTGATATTATTTTAAAAACTAAAAATCTT
GATAAACGCCGTAATGGCAATGTGATTTGGATTGCTCCAGTTGCAGAATTGATTAAAGCGGAAGAAGAAGAAGCGAAAGC
TGTTGCACAAAGTGTCAAACTTGCACCCTTACAGACTGAGTATATTCAACTGAAGTATGCTAAAGCTGGCGATATTATGG
GTCTCATTACACAAGGCTCAAATAATAGTAATGGCTTACAGCATACTTCTGGTGGAGGGACCTCAACTTCAACCAATTTA
AATACTGGAGTTGATAGTCTAGGCAATAATGTGGGGAGTTTGCTTAGCCCACGTGGCACTATTACTCAAGATGATCGAAC
CAATACTCTTATTATTAATGATACTGCTCAGTCAATTGATCAAATTCGTAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAGGTTATGGTTGAGGCACGTATTGTCAGAGCCTCTACGTCATTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTG
TCGCAAGGTATTACCAATAACAACAATTTGCTGGTTGGCGGTAGTGAAACAACTTTATGGAATTTACGCGAACCTAAAAA
AGATGAAACTACAGGTGGGTATAAATATACGATTGAGCGCCCAGATAACTTAAACGTGGATTTAGGAGTTTCTAATCCTG
CAGGAAGTATTGCTTTTGGCTTGATTAGTATGTCTGACTTTATGTTAGATCTTGAATTGTCTGCTTTACAAGCGGATGGT
TATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCCGATAAACAAACAGCGAAAGTTGCAACTGGTCAACAAGTTCC
ATATCAATCTACAACTAACTCTGCAGCAGGTTCAACTGCTACAACATCTTTTAAAGATGCTTTGCTGAGTTTAAATGTGA
CACCAAGTATTACACCTGATGGCAAGATTCAAATGAAGTTGGATATTTCTAAGGATTCTGTAGCGGGTGCGGCTCCAAAT
GGAGAGTTGATTTTAAATAAAAATAATATCAATACCAATGTATTGGTAGATAATGGCGAAACTGTCATTTTGGGTGGTGT
TTTTGAGCAAACGACTATGAATTCACAAACCAAAGTTCCTTTCTTTGGTGATATTCCTGTCGTTGGGCGTTTATTTAGAA
AAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTTTCGTTACACCACGAATTGTTAATGACACTTTAGCGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

99.723

100

0.997
  pilQ Acinetobacter baumannii strain A118

99.584

100

0.996
  comQ Acinetobacter baylyi ADP1

75.242

100

0.755
  pilQ Pseudomonas aeruginosa PAK

40.42

99.168

0.401

Multiple sequence alignment