Detailed information NTG0136729

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AO356_RS12170
• Genome accession: NZ_CP012831
• Coordinates: 2765501..2768086 (+)
• Length: 861 a.a.
• NCBI ID: WP_060739997.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain FW300-N2C3
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2760501..2773086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AO356_RS12150 (AO356_12135)	tssC	2760839..2762314 (+)	1476	WP_060739993.1	type VI secretion system contractile sheath large subunit	-
AO356_RS12155 (AO356_12140)	tssE	2762321..2762734 (+)	414	WP_060739994.1	type VI secretion system baseplate subunit TssE	-
AO356_RS12160 (AO356_12145)	tssF	2762734..2764521 (+)	1788	WP_060739995.1	type VI secretion system baseplate subunit TssF	-
AO356_RS12165 (AO356_12150)	tssG	2764485..2765489 (+)	1005	WP_060739996.1	type VI secretion system baseplate subunit TssG	-
AO356_RS12170 (AO356_12155)	clpC	2765501..2768086 (+)	2586	WP_060739997.1	type VI secretion system ATPase TssH	Regulator
AO356_RS12175 (AO356_12160)	-	2768097..2769614 (+)	1518	WP_060739998.1	sigma-54 interaction domain-containing protein	-
AO356_RS33040 (AO356_12165)	-	2769677..2769817 (+)	141	WP_060739999.1	hypothetical protein	-
AO356_RS12185 (AO356_12170)	tagH	2769838..2770617 (+)	780	Protein_2449	type VI secretion system-associated FHA domain protein TagH	-
AO356_RS12190 (AO356_12175)	tssJ	2770677..2771180 (+)	504	WP_060740001.1	type VI secretion system lipoprotein TssJ	-
AO356_RS12195 (AO356_12180)	tssK	2771177..2772508 (+)	1332	WP_060740002.1	type VI secretion system baseplate subunit TssK	-

Sequence

Protein

• Length: 861 a.a.
• Molecular weight: 93947.76 Da
• Isoelectric Point: 5.3047

>NTDB_id=136729 AO356_RS12170 WP_060739997.1 2765501..2768086(+) (clpC) [Pseudomonas fluorescens strain FW300-N2C3]
MINVDLQQLIQALDAETRRDLERAAEQCVARGADKVLVEDLMLGLLERPQGLLARALQDAQVSAGELGAALQPRMGHSAS
RNPVFAPELVQWLQDALLVANLELGRGQVGQAALILALLRNPLRYAGSAYLALLTRLNVDRLKAFALSQQAQPVADQPTT
PDDSLLARFTHDLTRQAREGQLDPVLCRDDEIRQMIDILVRRRKNNPIVVGEAGVGKTAIVEGLALRIVAGNVPPALEGV
ELLSLDMGLLQAGASIKGEFERRLKGVVDEVKASSKSIILFIDEAHTLIGGGNNAGGADAANLLKPALARGELRTIAATT
WTEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLARIYENSHGIYLRDDAVVAAAQLSACYLAGRQLPDKAVDVLD
TACARVRISLAAAPQSLERLRGELAEGECQRRALRRDAEAGLSIDLQALETLEAGLAAIEDECQTLEIQWTEQRILAERL
LSLRQQLARARESAVDQDLSIEALEAAVEQTYGSLVAAQTQERLVSFEVCPRLIAEVINAWTGVPLAQLAREHNLKVASF
ATDLRARIRGQEPAVQALDRAMRAAAAGLNKPDAPVGVFLLVGPSGVGKTETAHALADLLYGGERFITTINMAEFQEKHT
VSRLIGAPPGYVGFGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGLANDGEGREIDFRNTLILMTSNLGS
ERIDALCENGAQPSAERLEESIRPILSEHFKPALLARMCVVPYYPVSGPVLRELVEIKLDRLGERLRRRQLGFSYCGHLV
SHLVERCSRNDRGARLIDQLLDQHLMPLVADRLLAAMAGGEPLRHVHAVLEGEARVACEFS

Nucleotide

• Length: 2586 bp

>NTDB_id=136729 AO356_RS12170 WP_060739997.1 2765501..2768086(+) (clpC) [Pseudomonas fluorescens strain FW300-N2C3]
ATGATCAACGTAGACCTTCAACAATTGATCCAGGCGTTGGACGCCGAAACCAGGCGTGATCTGGAGCGCGCGGCCGAGCA
ATGCGTGGCCCGTGGCGCAGACAAGGTCCTGGTGGAGGACTTGATGCTGGGCTTGTTGGAGCGTCCGCAGGGGCTGCTCG
CGCGTGCCTTGCAGGATGCCCAGGTCAGTGCCGGCGAACTGGGCGCGGCCCTGCAACCGCGGATGGGGCACAGTGCTTCG
CGCAACCCGGTATTTGCCCCGGAACTGGTGCAGTGGTTGCAGGATGCGCTGCTGGTGGCCAATCTCGAGCTCGGCCGCGG
CCAGGTCGGACAAGCCGCGTTGATCCTGGCGTTGCTGCGCAATCCGCTCCGCTACGCCGGGAGTGCTTACCTGGCGCTGC
TGACCCGACTGAATGTCGATCGGCTGAAAGCGTTCGCCTTGTCGCAACAGGCTCAACCGGTTGCCGACCAGCCCACCACG
CCGGACGACTCCCTGCTGGCGCGCTTTACCCATGACCTGACCCGACAGGCCCGCGAAGGCCAACTCGACCCGGTGCTGTG
TCGCGATGACGAAATCAGGCAGATGATCGATATTCTCGTTCGTCGCCGCAAAAACAATCCAATCGTGGTCGGTGAAGCAG
GGGTGGGCAAGACCGCCATCGTCGAGGGGTTGGCGTTGCGCATCGTCGCCGGGAACGTACCCCCGGCGCTTGAGGGCGTT
GAACTGCTTTCGCTGGATATGGGACTGCTGCAGGCCGGTGCCAGCATCAAAGGGGAATTCGAGCGTCGTCTCAAGGGGGT
GGTCGACGAGGTCAAGGCTTCGTCCAAATCCATCATCCTGTTCATCGACGAGGCCCATACCTTGATCGGCGGGGGTAACA
ACGCCGGGGGTGCCGATGCGGCGAACCTGCTCAAGCCAGCCTTGGCCCGGGGCGAGCTGCGTACGATCGCGGCCACCACC
TGGACCGAGTATAAAAAATACTTTGAAAAAGACCCGGCCCTGGCCCGTCGTTTCCAACCGGTGCAATTGCACGAGCCGAC
CGTCAGCGAGGCGGTGACCATCCTGCGTGGCCTGGCCCGAATCTACGAGAACAGCCACGGCATCTACCTGCGTGATGATG
CGGTGGTCGCGGCGGCGCAATTATCGGCCTGCTACCTGGCCGGTCGTCAGTTGCCGGACAAGGCCGTGGACGTGCTCGAC
ACCGCCTGCGCTCGCGTGCGTATCAGCCTGGCCGCTGCCCCGCAAAGCCTGGAGCGATTGCGCGGCGAGCTGGCCGAAGG
CGAGTGCCAACGCCGGGCGCTGCGGCGTGATGCCGAGGCGGGCCTATCCATTGACCTTCAGGCGCTGGAAACGTTGGAGG
CAGGTCTGGCGGCCATCGAAGACGAGTGCCAAACGCTGGAAATCCAATGGACCGAGCAACGTATCCTCGCGGAGCGTTTG
CTGTCGCTGCGTCAGCAATTGGCCAGGGCACGGGAAAGCGCAGTGGATCAAGACCTCAGTATTGAAGCCCTGGAAGCAGC
GGTGGAGCAAACATACGGCTCGCTGGTGGCTGCGCAAACCCAGGAGCGTCTGGTCAGCTTCGAAGTTTGCCCGCGACTGA
TAGCCGAGGTGATCAACGCGTGGACCGGGGTACCGCTGGCGCAATTGGCACGCGAGCACAATCTGAAAGTCGCCAGTTTC
GCCACGGACCTGCGTGCGCGCATTCGTGGTCAGGAACCGGCTGTGCAGGCCCTTGATCGTGCGATGCGCGCCGCCGCCGC
GGGCTTGAACAAACCCGATGCCCCGGTGGGCGTATTTCTGTTGGTAGGCCCCAGTGGCGTTGGCAAGACCGAAACGGCAC
ATGCCCTCGCCGACCTGCTCTATGGCGGTGAGCGTTTCATCACCACGATCAACATGGCCGAGTTTCAGGAGAAACATACC
GTTTCCCGGCTGATCGGCGCGCCGCCGGGCTACGTCGGTTTTGGCGAAGGTGGCATGCTCACCGAAGCCGTGCGGCAAAA
GCCCTATAGCGTGGTGTTGCTCGATGAGGTCGAAAAAGCCGATCCCGATGTGTTGAACCTGTTCTACCAGATCTTCGACA
AGGGCCTGGCCAACGATGGGGAAGGGCGGGAGATTGATTTTCGCAACACCCTGATTCTGATGACGTCGAACCTGGGCAGT
GAACGTATCGACGCACTGTGCGAAAACGGCGCACAACCGAGTGCCGAGCGCCTTGAAGAATCCATTCGCCCGATCCTCAG
CGAGCATTTCAAGCCAGCGCTGCTGGCCCGTATGTGCGTGGTCCCGTATTACCCGGTCAGCGGGCCGGTGTTGCGTGAGC
TGGTGGAAATCAAACTCGACCGCCTGGGCGAGCGGTTGCGTCGTCGGCAGTTGGGCTTCAGTTATTGCGGGCATCTGGTG
AGCCATCTGGTCGAGCGCTGCAGTCGCAATGACCGTGGTGCGCGGCTGATTGACCAACTGCTCGACCAGCACCTGATGCC
GCTGGTGGCCGACCGCTTGCTCGCGGCCATGGCCGGTGGCGAACCGCTACGGCATGTACACGCGGTGCTCGAGGGTGAAG
CCCGCGTCGCGTGCGAGTTCTCCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (208-339)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (771-836)

• AAA lid domain (AAA_lid_9) (348-445)

• AAA domain (Cdc48 subfamily) (AAA_2) (595-758)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	36.98	97.677	0.361