Detailed information NTG0136703

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AO356_RS05895
• Genome accession: NZ_CP012831
• Coordinates: 1304502..1305509 (-)
• Length: 335 a.a.
• NCBI ID: WP_047227588.1
• Uniprot ID: A0ABM6UAE2
• Organism: Pseudomonas fluorescens strain FW300-N2C3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1299502..1310509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AO356_RS05880 (AO356_05870)	-	1299922..1300263 (+)	342	WP_060738978.1	DUF6124 family protein	-
AO356_RS05885 (AO356_05875)	mutS	1300978..1303545 (+)	2568	WP_203225777.1	DNA mismatch repair protein MutS	-
AO356_RS05890 (AO356_05880)	fdxA	1303688..1304011 (+)	324	WP_030139464.1	ferredoxin FdxA	-
AO356_RS05895 (AO356_05885)	rpoS	1304502..1305509 (-)	1008	WP_047227588.1	RNA polymerase sigma factor RpoS	Regulator
AO356_RS05900 (AO356_05890)	-	1305616..1306461 (-)	846	WP_060738980.1	peptidoglycan DD-metalloendopeptidase family protein	-
AO356_RS05905 (AO356_05895)	-	1306673..1307308 (-)	636	WP_161796107.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AO356_RS05910 (AO356_05900)	surE	1307350..1308099 (-)	750	WP_060738982.1	5'/3'-nucleotidase SurE	-
AO356_RS05915 (AO356_05905)	truD	1308087..1309145 (-)	1059	WP_060738983.1	tRNA pseudouridine(13) synthase TruD	-
AO356_RS05920 (AO356_05910)	ispF	1309142..1309615 (-)	474	WP_003184863.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AO356_RS05925 (AO356_05915)	fghA	1309659..1310504 (-)	846	WP_060738984.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38218.38 Da
• Isoelectric Point: 4.9536

>NTDB_id=136703 AO356_RS05895 WP_047227588.1 1304502..1305509(-) (rpoS) [Pseudomonas fluorescens strain FW300-N2C3]
MALSKEVPEFDIDDEVLLMETGIAMDSMSNDEGATPPSVRAKSRHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPE
EEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=136703 AO356_RS05895 WP_047227588.1 1304502..1305509(-) (rpoS) [Pseudomonas fluorescens strain FW300-N2C3]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTTATGGAGACCGGCATCGCTATGGATTC
GATGTCGAATGATGAAGGGGCGACTCCACCTTCCGTTCGTGCCAAATCCAGACACTCCGCTTCACTTAAACAACATAAGT
ACATCGATTACACGCGGGCGCTCGACGCCACCCAGTTGTACCTCAATGAAATCGGTTTCTCGCCACTGCTCTCCCCCGAG
GAAGAAGTTCATTTTGCGCGGCTGTCGCAAAGTGGCGACCCGGCCGGTCGAAAACGCATGATTGAAAGCAACTTGCGCCT
GGTGGTGAAAATCGCCCGACGCTACGTCAATCGTGGGCTTTCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGCCTGA
TTCGCGCCGTCGAGAAATTCGACCCCGAGCGCGGCTTCCGCTTCTCGACCTACGCGACCTGGTGGATCCGCCAGACCATC
GAACGGGCGATCATGAATCAGACCCGGACGATCCGGTTGCCGATTCATGTGGTCAAGGAACTGAACGTCTACCTGCGGGC
CGCCCGCGAGTTGACCCAGAAACTCGACCATGAACCGTCACCCGAGGAAATCGCCAACCTGCTGGAAAAACCGGTGGGTG
AGGTCAAGCGCATGCTTGGGCTCAACGAGCGGGTCTCCTCGGTGGACGTTTCCCTGGGGCCGGACTCGGATAAAACCTTG
CTGGACACCCTCACCGATGATCGACCTACCGATCCATGCGAGCTGTTGCAGGACGATGACCTGTCCCAGAGCATCGACCA
GTGGCTTTCGGAGCTGACCGACAAGCAACGGGAAGTGGTGATCCGCCGCTTCGGCTTGCGGGGGCATGAAAGCAGCACCC
TTGAAGATGTAGGCCTGGAGATTGGTTTGACCCGTGAACGGGTCAGGCAGATCCAGGTGGAAGGCCTCAAGCGTCTCCGG
GAGATCCTGGAGAAGAATGGCCTGTCGAGTGAGTCGCTGTTTCAATAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.868	99.701	0.657