Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   AO353_RS22700 Genome accession   NZ_CP012830
Coordinates   4970668..4971285 (+) Length   205 a.a.
NCBI ID   WP_054596985.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2E3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4965668..4976285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO353_RS22685 (AO353_22685) - 4966843..4967730 (+) 888 WP_054596982.1 Dyp-type peroxidase -
  AO353_RS22690 (AO353_22690) - 4967853..4969598 (-) 1746 WP_054596983.1 amidohydrolase -
  AO353_RS22695 (AO353_22695) - 4969703..4970620 (+) 918 WP_054596984.1 LysR family transcriptional regulator -
  AO353_RS22700 (AO353_22700) dinR/lexA 4970668..4971285 (+) 618 WP_054596985.1 transcriptional repressor LexA Regulator
  AO353_RS22705 (AO353_22705) imuA 4971285..4971902 (+) 618 WP_054596986.1 translesion DNA synthesis-associated protein ImuA -
  AO353_RS22710 (AO353_22710) - 4971910..4973325 (+) 1416 WP_054596987.1 Y-family DNA polymerase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22481.85 Da        Isoelectric Point: 8.0605

>NTDB_id=136672 AO353_RS22700 WP_054596985.1 4970668..4971285(+) (dinR/lexA) [Pseudomonas fluorescens strain FW300-N2E3]
MYSMTTLTPRRTAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVARKHVVALTEAGFIEVNPHQARGIRLLNQPRRPEL
LDIPVLGRVAAGVPMGVDAEVHSRLWLDPAMFSRTPDYLLRVQGDSMIGDGILDGDLVGVRRSAEVRNGQIVVARLEGEV
TIKRFERAGDSVRLLPRNPDYSPIVVAADQDLAIEGVFCGLVRQG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=136672 AO353_RS22700 WP_054596985.1 4970668..4971285(+) (dinR/lexA) [Pseudomonas fluorescens strain FW300-N2E3]
ATGTACTCCATGACGACTTTGACTCCCCGCCGTACCGCCATCCTGACCTTCATCCGCGACCGTATCGCGCAACAAGGCCA
GTCACCGAGCCTCGCTGAAATCAGCGAGGCGTTCGGTTTTGCCTCACGCAGCGTGGCGCGCAAGCATGTGGTGGCGCTGA
CCGAGGCCGGTTTCATCGAGGTCAATCCGCACCAGGCCCGCGGTATTCGCTTGCTCAATCAGCCGCGTCGCCCCGAGTTG
CTGGACATCCCGGTACTCGGGCGGGTGGCCGCCGGTGTGCCGATGGGAGTCGATGCCGAGGTGCACAGCCGCTTGTGGCT
GGATCCGGCAATGTTCTCGCGCACACCGGACTACCTGCTGCGGGTTCAGGGCGACTCGATGATCGGCGACGGCATTCTCG
ACGGTGATCTGGTGGGCGTGCGCCGCAGTGCCGAGGTGCGGAACGGCCAGATCGTCGTTGCGCGGCTTGAGGGCGAAGTC
ACCATCAAGCGCTTTGAGCGGGCAGGGGACAGCGTGCGGTTGCTGCCGCGCAACCCGGATTACAGCCCCATTGTGGTCGC
CGCCGATCAGGACCTGGCGATTGAAGGGGTGTTCTGCGGTCTGGTGAGGCAAGGGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-68)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.232

100

0.366