Detailed information NTG0136652

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AO353_RS16615
• Genome accession: NZ_CP012830
• Coordinates: 3689920..3690924 (+)
• Length: 334 a.a.
• NCBI ID: WP_054595931.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain FW300-N2E3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3684920..3695924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AO353_RS16590 (AO353_16590)	ispF	3685803..3686276 (+)	474	WP_054595926.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AO353_RS16595 (AO353_16595)	truD	3686273..3687331 (+)	1059	WP_054595927.1	tRNA pseudouridine(13) synthase TruD	-
AO353_RS16600 (AO353_16600)	surE	3687319..3688068 (+)	750	WP_054595928.1	5'/3'-nucleotidase SurE	-
AO353_RS16605 (AO353_16605)	-	3688110..3688745 (+)	636	WP_173859967.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AO353_RS16610 (AO353_16610)	-	3688957..3689814 (+)	858	WP_054595930.1	peptidoglycan DD-metalloendopeptidase family protein	-
AO353_RS16615 (AO353_16615)	rpoS	3689920..3690924 (+)	1005	WP_054595931.1	RNA polymerase sigma factor RpoS	Regulator
AO353_RS16620 (AO353_16620)	fdxA	3691438..3691761 (-)	324	WP_019692115.1	ferredoxin FdxA	-
AO353_RS16625 (AO353_16625)	mutS	3691904..3694483 (-)	2580	WP_054595932.1	DNA mismatch repair protein MutS	-
AO353_RS16630 (AO353_16630)	-	3694684..3695418 (+)	735	WP_054598255.1	XRE family transcriptional regulator	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38165.22 Da
• Isoelectric Point: 4.8909

>NTDB_id=136652 AO353_RS16615 WP_054595931.1 3689920..3690924(+) (rpoS) [Pseudomonas fluorescens strain FW300-N2E3]
MALSKEVPEFDIDDEVLLMETDVASDEMSNEGSATPSVRSKSRHSATLKQHKYIDYTRALDATQLYLNEIGFSPLLSPEE
EVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLRE
ILEKNGLSSESLFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=136652 AO353_RS16615 WP_054595931.1 3689920..3690924(+) (rpoS) [Pseudomonas fluorescens strain FW300-N2E3]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTGATGGAGACCGACGTCGCATCGGATGA
GATGTCGAATGAAGGATCAGCTACGCCTTCAGTTCGCTCCAAATCCAGGCACTCCGCAACACTCAAGCAGCATAAGTACA
TCGACTACACCCGAGCGCTCGATGCTACCCAGTTGTACCTCAACGAAATCGGCTTTTCCCCCTTGTTGTCACCGGAAGAA
GAAGTTCATTTTGCGCGACTGTCGCAAAGTGGCGATCCGGCTGGGCGCAAGCGCATGATTGAAAGCAACCTGCGACTGGT
GGTGAAAATCGCCCGACGCTATGTCAATCGTGGACTGTCGCTGCTCGACCTGATCGAAGAGGGCAACCTCGGCCTGATCC
GGGCAGTGGAAAAGTTCGACCCAGAGCGCGGCTTCCGTTTTTCGACCTACGCGACCTGGTGGATACGCCAGACCATCGAG
CGTGCAATCATGAATCAGACCCGGACCATCCGGCTGCCGATTCATGTGGTGAAAGAGCTCAACGTCTACCTTCGTGCGGC
ACGGGAGCTGACGCAAAAGCTCGATCATGAACCCTCACCCGAAGAAATCGCCAACCTGCTGGAAAAACCGGTAGGAGAGG
TCAAGCGCATGCTGGGCCTGAACGAGCGGGTTTCTTCGGTCGACGTCTCGCTGGGTCCGGATTCGGATAAAACCCTGCTG
GACACCCTTACGGATGACCGCCCTACCGATCCTTGTGAGCTGCTTCAGGATGATGACCTGTCGCAGAGCATCGATCAGTG
GCTCTCGGAGCTGACGGACAAACAGCGCGAAGTGGTGATCCGCCGCTTCGGCCTGCGCGGCCACGAGAGCAGTACGCTGG
AAGACGTAGGCCTGGAGATTGGCCTGACCCGTGAGCGGGTCAGACAGATTCAGGTTGAAGGTCTGAAACGTCTGCGTGAA
ATCCTTGAGAAGAATGGCCTGTCGAGTGAGTCGCTGTTCCAGTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-93)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.766	100	0.668