Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AO353_RS15975 Genome accession   NZ_CP012830
Coordinates   3529111..3529815 (-) Length   234 a.a.
NCBI ID   WP_054595821.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2E3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3524111..3534815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO353_RS31565 (AO353_15965) - 3525982..3526719 (-) 738 WP_054595819.1 membrane-targeted effector domain-containing toxin -
  AO353_RS15970 (AO353_15970) - 3526692..3528959 (-) 2268 WP_237142897.1 dermonecrotic toxin domain-containing protein -
  AO353_RS15975 (AO353_15975) treR 3529111..3529815 (-) 705 WP_054595821.1 trehalose operon repressor Regulator
  AO353_RS15980 (AO353_15980) treP 3530038..3531480 (+) 1443 WP_054595822.1 PTS system trehalose-specific EIIBC component -
  AO353_RS15985 (AO353_15985) treC 3531673..3533322 (+) 1650 WP_054595823.1 alpha,alpha-phosphotrehalase -
  AO353_RS15990 (AO353_15990) - 3533419..3534642 (+) 1224 WP_054595824.1 maltoporin -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26840.36 Da        Isoelectric Point: 6.1621

>NTDB_id=136649 AO353_RS15975 WP_054595821.1 3529111..3529815(-) (treR) [Pseudomonas fluorescens strain FW300-N2E3]
MSKYNQIYSDLLASITTERLERGARLPSETELMDSYQASRGTVRKAIELLQERGFAQKIHGKGTFVLSTNPIEFQLGGIV
SFQETYPRLGNDVSTEVVEFEQIPLQGALLEHLKAEEGSLITRIKRVRRIDGKRVILDINHFVAELIPGLNREIAEHSIY
AFIEQTLQLQIAYAQRTIEAMPRSKDDQQHLDLDGQSHVIVVSNQTFLQDGRQFEYTESRHTLDKFYFSDVARR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=136649 AO353_RS15975 WP_054595821.1 3529111..3529815(-) (treR) [Pseudomonas fluorescens strain FW300-N2E3]
ATGAGCAAATACAACCAGATCTACAGCGATCTGCTTGCCAGCATCACCACCGAACGTCTGGAACGCGGCGCGCGGTTACC
TTCCGAAACCGAATTGATGGACAGCTACCAGGCCAGTCGCGGCACCGTGCGCAAGGCTATCGAACTGCTTCAGGAACGCG
GCTTCGCCCAGAAAATCCACGGTAAAGGCACCTTCGTACTGTCGACCAACCCGATCGAATTCCAGCTCGGCGGCATCGTC
AGTTTTCAGGAGACCTACCCAAGGCTGGGCAACGACGTCAGCACCGAGGTCGTGGAGTTCGAGCAGATTCCCCTGCAAGG
CGCCTTGCTCGAACACCTGAAAGCCGAAGAAGGCAGCCTGATCACGCGGATCAAGCGCGTACGGCGAATCGATGGCAAAA
GGGTCATCCTCGACATCAACCACTTCGTCGCCGAGCTCATTCCGGGGCTGAACCGCGAGATCGCCGAGCACTCGATCTAC
GCCTTCATCGAGCAGACCCTGCAACTGCAAATCGCCTACGCCCAACGCACCATTGAAGCGATGCCGCGGAGCAAGGATGA
CCAGCAGCACCTGGACCTCGACGGCCAGAGCCATGTGATCGTGGTCAGCAACCAGACCTTTTTGCAGGACGGCCGGCAGT
TCGAGTACACCGAATCACGGCATACCCTGGACAAGTTCTACTTTTCGGACGTGGCGCGGCGCTGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(90-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

40.171

100

0.402