Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RR32_RS16880 Genome accession   NZ_CP010368
Coordinates   3593556..3595124 (+) Length   522 a.a.
NCBI ID   WP_031956174.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588556..3600124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS16860 (RR32_16865) - 3589047..3590348 (+) 1302 WP_002048970.1 homoserine dehydrogenase -
  RR32_RS16865 (RR32_16870) thrC 3590404..3591543 (+) 1140 WP_002048893.1 threonine synthase -
  RR32_RS16870 (RR32_16875) pbpG 3591652..3592698 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RR32_RS16875 (RR32_16880) - 3592910..3593545 (+) 636 WP_000633799.1 response regulator -
  RR32_RS16880 (RR32_16885) pilS 3593556..3595124 (+) 1569 WP_031956174.1 sensor histidine kinase Regulator
  RR32_RS16885 (RR32_16890) pilR 3595148..3596569 (+) 1422 WP_039249058.1 sigma-54-dependent transcriptional regulator Regulator
  RR32_RS16890 (RR32_16895) - 3596573..3597757 (-) 1185 WP_004883636.1 S41 family peptidase -
  RR32_RS16895 (RR32_16900) gpmI 3597773..3599320 (-) 1548 WP_039249059.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59199.67 Da        Isoelectric Point: 6.8576

>NTDB_id=136634 RR32_RS16880 WP_031956174.1 3593556..3595124(+) (pilS) [Acinetobacter nosocomialis strain 6411]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTNAQTDNSLQQPSLYFYTLLSYSIVSLVQLLCFKFIAIQTTRQ
LILFFIVDIICLSLLSFSAGEPNLQISLLYVIAIFTSAILLSARVSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEQGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHPDLFEILKFGDLKENDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDLNNFINTLLDEDLSDVK
HSIQLKISDRSLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVMINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=136634 RR32_RS16880 WP_031956174.1 3593556..3595124(+) (pilS) [Acinetobacter nosocomialis strain 6411]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCAATGCTCAAACCGACAATAGTTTGCAGCAACCCTCTTTATATTTTT
ACACTTTACTAAGCTATTCAATTGTAAGTCTTGTGCAATTGTTATGCTTTAAATTTATTGCTATCCAAACTACTCGGCAG
CTTATTTTATTTTTTATTGTCGACATTATTTGTTTAAGCCTCCTTTCATTTTCTGCTGGGGAGCCTAATTTACAAATTAG
TTTGCTGTATGTGATTGCTATCTTTACTTCGGCGATTTTGCTCAGTGCAAGAGTGTCTTTAGTTATTACCTTACTTGCGG
TTATTGCGGTTATTTACCAACGCTTCGTGGGTAGTTTATTTGACTACAACAATCTAAACACAATCGGTAATAGCGCTTTA
TTAGCTTTTTTATTTTTCGTTGTTCACGGGATTGGACAAATTGCAGTGCAGCGCTTTAAATTACTTGAGGCACTCACCTT
TCACCAGTCAATCGAGCTTTACCAGCTTCAAAATATTAACCGTTATATTTTAGAGCAAATTGAACAAGGCTATTTAGTTT
TAGACGAAAATTACGACATTGTTGTTAGCAATCCCGCTGCTTGTTCACTACTTGGTATTCCTCCCCAGTTTGCCAATGAA
AAATATCCTTTAGCTAAATGGCATCCCGATTTATTTGAAATATTGAAGTTTGGCGACTTAAAAGAAAATGACCGATTTAT
TTTTGAGTCTCGGCTATCGGCTTATTCCATTAATATTAAAGTACAGCATCTTTTAGTGCCGCAACAAGCTCTAACACTAC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAGCAACTTAAACTTGCCGCTTTAGGGCAACTCTCGGCAAGT
ATTGCACATGAAATCCGCAATCCCCTGGCTGCAATTGTTCAAGCAAATGAGTTACTTAAAGATAGTGATCTCGAACAACA
AAATACTTTACGCCATATGATTGGCAAGCAAACTAAACGCATTGATAGTATTGTTCAGGACACCTTAGGACTTGCTCGTA
GCGAAAGAACACACCCTATTCAGATTGACTTAAACAATTTTATAAATACGCTACTCGATGAAGATTTATCTGACGTTAAG
CACTCAATTCAACTCAAAATTTCTGATCGTTCTTTAAAATTTTTATTTGACGAAAAACAACTAAGACAAGTCATGATCAA
TTTAGTGCGAAATGCTTTACGACATAATGCACCCGACTCACCGAATGTCATGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941

Multiple sequence alignment