Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AO353_RS03720 Genome accession   NZ_CP012830
Coordinates   794696..796123 (-) Length   475 a.a.
NCBI ID   WP_054593733.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2E3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 789696..801123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO353_RS03695 (AO353_03695) - 790806..791570 (+) 765 WP_054593729.1 DUF2334 domain-containing protein -
  AO353_RS03700 (AO353_03700) - 791567..792562 (+) 996 WP_054593730.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  AO353_RS03705 (AO353_03705) - 792745..792951 (-) 207 WP_054593731.1 hypothetical protein -
  AO353_RS03710 (AO353_03710) purU 793032..793880 (-) 849 WP_054593732.1 formyltetrahydrofolate deformylase -
  AO353_RS03715 (AO353_03715) mvaT 794221..794595 (+) 375 WP_005790963.1 histone-like nucleoid-structuring protein MvaT -
  AO353_RS03720 (AO353_03720) sbcB 794696..796123 (-) 1428 WP_054593733.1 exodeoxyribonuclease I Machinery gene
  AO353_RS03725 (AO353_03725) - 796298..797023 (+) 726 WP_054593734.1 RDD family protein -
  AO353_RS03730 (AO353_03730) - 797020..798000 (+) 981 WP_054598167.1 stage II sporulation protein M -
  AO353_RS03735 (AO353_03735) - 797987..799525 (+) 1539 WP_054593735.1 DUF4129 domain-containing protein -
  AO353_RS03740 (AO353_03740) - 799522..800679 (+) 1158 WP_054593736.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54888.18 Da        Isoelectric Point: 5.1760

>NTDB_id=136593 AO353_RS03720 WP_054593733.1 794696..796123(-) (sbcB) [Pseudomonas fluorescens strain FW300-N2E3]
MTSIFWYDYETTGISPRCDRPLQMAGIRTDLDLNEIDDPVNLYCQPSDDILPHPAACVITGITPGRLAEQGLSEADFMTR
VHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPHGIVWPEEDGRVTLKLER
LTAANGLDHGQAHDALSDVRATIALARLIRDKQPKLYDWLFKLRSKQKVMDQIRLLQPMVHISGRFSAARSYVGVVLPLA
WHPRNRNALIVCDLHLDPQGLLDQDTETLRQRLYTRREDLAEGELPVPLKLIHINRCPVVAPLSVLRAEDQQRLQLDMAQ
YEARALRLSDAQEVWRDKVLAIYAREDFTPIEDPEQQLYDGFIGDRDRRLCEQVRNADPMQLAQEQWPFDDERLPELLFR
YRARNFPETLSREEHERWKLFCQQRLSDAGWGAPNTLQGFNEAMAQCSLSATAIQQQVLDEWREYVDSLRKRLDL

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=136593 AO353_RS03720 WP_054593733.1 794696..796123(-) (sbcB) [Pseudomonas fluorescens strain FW300-N2E3]
GTGACCTCCATCTTCTGGTACGACTACGAAACCACCGGCATCTCACCGCGCTGCGACCGTCCGCTGCAAATGGCCGGGAT
TCGCACCGACCTTGACCTCAACGAGATCGACGATCCGGTCAATCTCTACTGCCAGCCGAGCGACGACATCCTGCCTCACC
CGGCGGCGTGCGTGATTACCGGCATCACCCCCGGCCGCCTGGCCGAGCAAGGCCTGAGTGAAGCCGACTTCATGACCCGG
GTACATGCGCAACTCGCGGCCCCCGGAACCTGTGGTGCCGGTTACAACACCTTGCGCTTCGATGATGAAATGACCCGTTA
CAGCCTGTACCGGAATTTCTTTGATCCGTATGCGCGGGAGTGGCAGGGCGGCAACAGTCGCTGGGATCTGATCGATGTGG
TGCGCGCGGCGTACGCGTTGCGCCCGCACGGTATTGTCTGGCCTGAAGAAGACGGTCGCGTCACGTTGAAACTCGAACGC
CTGACTGCCGCCAATGGCCTCGACCATGGCCAGGCTCACGATGCGTTGTCCGATGTGCGCGCGACGATTGCCCTGGCGCG
GTTGATCCGCGACAAGCAGCCAAAACTCTACGACTGGCTGTTCAAGCTGCGCAGCAAGCAGAAGGTCATGGATCAGATCC
GCCTGTTGCAACCGATGGTGCATATCTCTGGGCGTTTCTCGGCAGCCCGCAGCTATGTCGGGGTGGTCTTGCCGTTGGCC
TGGCACCCGCGCAATCGCAACGCACTGATTGTCTGCGACCTGCATCTCGATCCGCAGGGGCTACTCGACCAGGACACCGA
GACCTTGCGTCAGCGTTTGTACACCCGCCGCGAGGATCTGGCCGAAGGCGAATTACCGGTGCCGCTCAAACTGATTCACA
TCAACCGTTGCCCGGTGGTGGCACCGTTGTCGGTGTTGCGCGCCGAAGACCAGCAACGATTGCAACTGGACATGGCGCAG
TATGAAGCGCGCGCACTGCGTCTAAGTGACGCACAGGAAGTATGGCGAGATAAAGTTCTGGCCATTTATGCCCGCGAGGA
TTTCACGCCAATCGAGGACCCTGAACAACAGTTATACGACGGCTTCATTGGCGATCGGGACCGGCGTTTATGCGAACAAG
TCCGAAATGCGGACCCGATGCAATTAGCGCAAGAGCAATGGCCGTTCGATGATGAACGTTTGCCGGAATTATTATTTCGT
TATCGTGCGCGTAACTTTCCCGAGACCTTGAGTCGCGAGGAGCACGAACGCTGGAAATTATTCTGTCAGCAACGTTTGTC
AGACGCCGGATGGGGAGCGCCCAATACCTTGCAGGGGTTTAATGAGGCAATGGCGCAATGCTCGCTTAGTGCTACAGCGA
TTCAGCAACAGGTACTGGACGAATGGCGCGAGTATGTCGACTCATTACGCAAGCGTTTGGATCTTTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(204-467)

Exonuclease (RNase_T)

(6-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

48.706

89.474

0.436