Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   AO353_RS01330 Genome accession   NZ_CP012830
Coordinates   288196..288552 (-) Length   118 a.a.
NCBI ID   WP_054593340.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2E3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283196..293552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO353_RS01305 (AO353_01305) - 283342..283947 (-) 606 WP_054593336.1 DUF4823 domain-containing protein -
  AO353_RS01310 (AO353_01310) - 284196..285164 (-) 969 WP_054593337.1 GTP 3',8-cyclase MoaA -
  AO353_RS01315 (AO353_01315) - 285305..285943 (-) 639 WP_019689364.1 TetR/AcrR family transcriptional regulator -
  AO353_RS01320 (AO353_01320) - 286023..287156 (+) 1134 WP_054593338.1 aminotransferase class V-fold PLP-dependent enzyme -
  AO353_RS01325 (AO353_01325) - 287395..288183 (-) 789 WP_054593339.1 TatD family hydrolase -
  AO353_RS01330 (AO353_01330) pilZ 288196..288552 (-) 357 WP_054593340.1 PilZ domain-containing protein Machinery gene
  AO353_RS01335 (AO353_01335) - 288595..289581 (-) 987 WP_054593341.1 DNA polymerase III subunit delta' -
  AO353_RS01340 (AO353_01340) tmk 289574..290206 (-) 633 WP_054593342.1 dTMP kinase -
  AO353_RS01345 (AO353_01345) mltG 290226..291416 (-) 1191 WP_054593343.1 endolytic transglycosylase MltG -
  AO353_RS01350 (AO353_01350) pabC 291420..292235 (-) 816 WP_054593344.1 aminodeoxychorismate lyase -
  AO353_RS01355 (AO353_01355) fabF 292235..293479 (-) 1245 WP_054593345.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12896.90 Da        Isoelectric Point: 8.4498

>NTDB_id=136583 AO353_RS01330 WP_054593340.1 288196..288552(-) (pilZ) [Pseudomonas fluorescens strain FW300-N2E3]
MNELVSLGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKSYKLGDEVFMLLHLMDEPEKIPVAGTVTWITPKGAQG
NRAAGVGVQFNEGDDTARSRIETYLVGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=136583 AO353_RS01330 WP_054593340.1 288196..288552(-) (pilZ) [Pseudomonas fluorescens strain FW300-N2E3]
ATGAATGAACTTGTCAGCCTGGGCCCGCGTAACGGCATCCTGTCCCTGACCATCAAGGACAAATCCGTGCTTTATGCGGC
CTACATGCCGTTCATCAAGAACGGCGGTCTGTTTATCCCGACCAACAAAAGCTACAAGTTGGGCGACGAGGTATTCATGC
TGCTGCACTTGATGGATGAACCGGAAAAAATTCCGGTGGCCGGTACCGTGACCTGGATTACCCCCAAAGGGGCTCAGGGG
AATCGCGCTGCCGGTGTCGGCGTGCAGTTCAATGAAGGCGATGACACCGCTCGAAGCCGAATCGAAACCTACCTGGTCGG
AGCCCTGAAGTCCGACCGTCCCACTCATACGATGTAG

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

45.794

90.678

0.415
  pilZ Legionella pneumophila strain ERS1305867

45.794

90.678

0.415