Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   EHS42_RS15280 Genome accession   NZ_CP010350
Coordinates   3104852..3107074 (+) Length   740 a.a.
NCBI ID   WP_010325795.1    Uniprot ID   -
Organism   Acinetobacter johnsonii XBB1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3099852..3112074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHS42_RS15255 (RZ95_15105) lnt 3100280..3101839 (+) 1560 WP_010325799.1 apolipoprotein N-acyltransferase -
  EHS42_RS15260 (RZ95_15110) - 3101906..3102244 (-) 339 WP_004978826.1 tRNA-binding protein -
  EHS42_RS15265 (RZ95_15115) - 3102404..3102739 (-) 336 WP_010325798.1 hypothetical protein -
  EHS42_RS15270 (RZ95_15120) gspG 3103023..3103460 (-) 438 WP_010325797.1 type II secretion system major pseudopilin GspG -
  EHS42_RS15275 (RZ95_15125) gspF 3103494..3104699 (-) 1206 WP_010325796.1 type II secretion system inner membrane protein GspF -
  EHS42_RS15280 (RZ95_15130) priA 3104852..3107074 (+) 2223 WP_010325795.1 primosomal protein N' Machinery gene
  EHS42_RS15285 (RZ95_15135) - 3107157..3108998 (+) 1842 WP_010325794.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  EHS42_RS15290 (RZ95_15140) - 3109049..3109924 (+) 876 WP_010325793.1 Hsp33 family molecular chaperone HslO -
  EHS42_RS15295 (RZ95_15145) - 3110126..3110578 (+) 453 WP_010325792.1 DUF2147 domain-containing protein -
  EHS42_RS15300 (RZ95_15150) - 3110722..3111675 (+) 954 WP_010325791.1 DnaJ C-terminal domain-containing protein -
  EHS42_RS15305 (RZ95_15155) - 3111686..3112042 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84218.11 Da        Isoelectric Point: 8.8797

>NTDB_id=136568 EHS42_RS15280 WP_010325795.1 3104852..3107074(+) (priA) [Acinetobacter johnsonii XBB1]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDTKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKVRHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQNFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=136568 EHS42_RS15280 WP_010325795.1 3104852..3107074(+) (priA) [Acinetobacter johnsonii XBB1]
ATGCCAGAAAATACACTTTCCACAACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGGCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATACTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCTTATAACCTACTGGCGCGAATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTAAAACGTTCAGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACCGGA
ACGTCTGAAAACATTTTAAATTTGGCTGGTATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCTCAAGACTTTAAACCCCAAGCCATGACACTGGCGCAAATGCCTCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGTTCGTCATAGCTACCACGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAAAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACGCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGACTTATCTTTCAAGCAACAAGAGGGCTTCCGTTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCGGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAACTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCGAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCAAATTTTGACGTAATTCGGGTTGATCGTGACTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTAGTGGCGATTTTAGACATCGACTCAGGCCTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGCGGCGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGATCATC
CTTTGCTGAATACCCTGCTGGAATCAGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAACTTTTTACAAGAGCATGC
GCAAGCACTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCACAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709

Multiple sequence alignment