Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   SanJ4211_RS09050 Genome accession   NZ_CP012805
Coordinates   1799171..1799401 (-) Length   76 a.a.
NCBI ID   WP_003026583.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1794171..1804401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS09035 (SanJ4211_1795c) - 1794264..1796810 (-) 2547 WP_057489833.1 SSURE domain-containing protein -
  SanJ4211_RS09040 (SanJ4211_1796) - 1796963..1797418 (+) 456 WP_041784064.1 histidine phosphatase family protein -
  SanJ4211_RS09045 (SanJ4211_1797) - 1797589..1798791 (+) 1203 WP_070836332.1 IS110 family transposase -
  SanJ4211_RS09050 comW 1799171..1799401 (-) 231 WP_003026583.1 sigma(X)-activator ComW Regulator
  SanJ4211_RS09055 (SanJ4211_1799c) - 1799618..1799908 (-) 291 Protein_1764 SDR family NAD(P)-dependent oxidoreductase -
  SanJ4211_RS09060 (SanJ4211_1800c) - 1799935..1800987 (-) 1053 WP_021002180.1 sugar transferase -
  SanJ4211_RS09065 (SanJ4211_1801c) - 1801043..1801990 (-) 948 WP_021002181.1 stealth family protein -
  SanJ4211_RS09070 (SanJ4211_1802c) glf 1801987..1803087 (-) 1101 WP_021002182.1 UDP-galactopyranose mutase -
  SanJ4211_RS09075 (SanJ4211_1803c) - 1803101..1804099 (-) 999 WP_003040757.1 acyltransferase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 9461.81 Da        Isoelectric Point: 6.2081

>NTDB_id=136568 SanJ4211_RS09050 WP_003026583.1 1799171..1799401(-) (comW) [Streptococcus anginosus strain J4211]
MMEIQEIYNQFRDYYGELEAEYAHCQKASMEWESLRLHYLIYYLIRYGIGEMKFFNAYHYRAAYRWYLQSLMLSSA

Nucleotide


Download         Length: 231 bp        

>NTDB_id=136568 SanJ4211_RS09050 WP_003026583.1 1799171..1799401(-) (comW) [Streptococcus anginosus strain J4211]
ATGATGGAAATTCAAGAAATTTATAATCAATTCAGAGATTACTATGGGGAGCTTGAGGCTGAGTATGCCCATTGTCAAAA
GGCTAGCATGGAGTGGGAAAGCCTGCGTCTGCACTATCTGATATACTACCTGATACGCTACGGTATCGGGGAGATGAAGT
TTTTTAATGCCTATCATTATCGGGCAGCTTATCGCTGGTATTTGCAGTCCTTGATGCTGAGCTCGGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

43.836

96.053

0.421
  comW Streptococcus pneumoniae D39

43.836

96.053

0.421
  comW Streptococcus pneumoniae R6

43.836

96.053

0.421
  comW Streptococcus pneumoniae TIGR4

43.836

96.053

0.421
  comW Streptococcus mitis NCTC 12261

41.096

96.053

0.395
  comW Streptococcus mitis SK321

41.096

96.053

0.395

Multiple sequence alignment