Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EHS42_RS14150 Genome accession   NZ_CP010350
Coordinates   2873353..2873751 (-) Length   132 a.a.
NCBI ID   WP_029574943.1    Uniprot ID   A0AAJ6IBM2
Organism   Acinetobacter johnsonii XBB1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868353..2878751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHS42_RS14120 (RZ95_13970) - 2868425..2868694 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  EHS42_RS14125 (RZ95_13975) rapZ 2868691..2869542 (-) 852 WP_004692298.1 RNase adapter RapZ -
  EHS42_RS14130 (RZ95_13980) panC 2869569..2870411 (-) 843 WP_010325934.1 pantoate--beta-alanine ligase -
  EHS42_RS14135 (RZ95_13985) panB 2870415..2871224 (-) 810 WP_010325933.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  EHS42_RS14140 (RZ95_13990) folK 2871261..2871749 (-) 489 WP_010325932.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  EHS42_RS14145 (RZ95_13995) pcnB 2871746..2873215 (-) 1470 WP_010325931.1 polynucleotide adenylyltransferase PcnB -
  EHS42_RS14150 (RZ95_14000) comEA 2873353..2873751 (-) 399 WP_029574943.1 ComEA family DNA-binding protein Machinery gene
  EHS42_RS14155 (RZ95_14005) mazG 2873770..2874531 (-) 762 WP_010325929.1 nucleoside triphosphate pyrophosphohydrolase -
  EHS42_RS14160 (RZ95_14010) - 2874650..2875417 (+) 768 WP_010325928.1 SDR family oxidoreductase -
  EHS42_RS14165 (RZ95_14015) - 2875458..2877764 (-) 2307 WP_004979149.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14697.19 Da        Isoelectric Point: 10.8498

>NTDB_id=136565 EHS42_RS14150 WP_029574943.1 2873353..2873751(-) (comEA) [Acinetobacter johnsonii XBB1]
MIKIKVSLLIIALLLLSLLAWIPSSYAQSFDQNYLNWKAEQQVWDDRIQAPKSVKRAVSPVQAQPVSSTNKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=136565 EHS42_RS14150 WP_029574943.1 2873353..2873751(-) (comEA) [Acinetobacter johnsonii XBB1]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCGTGGATACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTATCTGAACTGGAAAGCAGAGCAGCAGGTGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTCGAGCACAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAGCTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACTCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.918

92.424

0.508
  comEA Acinetobacter baumannii D1279779

52.419

93.939

0.492

Multiple sequence alignment