Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SanJ4211_RS07080 Genome accession   NZ_CP012805
Coordinates   1408702..1410360 (-) Length   552 a.a.
NCBI ID   WP_021001933.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1403702..1415360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS07055 (SanJ4211_1402) - 1404202..1405155 (+) 954 WP_003023723.1 ABC transporter permease -
  SanJ4211_RS07060 (SanJ4211_1403) - 1405148..1406110 (+) 963 WP_057489783.1 iron chelate uptake ABC transporter family permease subunit -
  SanJ4211_RS07065 (SanJ4211_1404) - 1406112..1406864 (+) 753 WP_021001931.1 ABC transporter ATP-binding protein -
  SanJ4211_RS07070 (SanJ4211_1405) - 1406887..1407861 (+) 975 WP_003023719.1 siderophore ABC transporter substrate-binding protein -
  SanJ4211_RS07075 (SanJ4211_1406c) - 1407924..1408655 (-) 732 WP_021001932.1 metallophosphoesterase -
  SanJ4211_RS07080 (SanJ4211_1407c) recN 1408702..1410360 (-) 1659 WP_021001933.1 DNA repair protein RecN Machinery gene
  SanJ4211_RS07085 (SanJ4211_1408c) - 1410368..1410799 (-) 432 WP_021001934.1 arginine repressor -
  SanJ4211_RS07090 (SanJ4211_1409c) - 1410792..1411607 (-) 816 WP_021001935.1 TlyA family RNA methyltransferase -
  SanJ4211_RS07095 (SanJ4211_1410c) - 1411573..1412475 (-) 903 WP_003023709.1 polyprenyl synthetase family protein -
  SanJ4211_RS07100 (SanJ4211_1411c) - 1412472..1412684 (-) 213 WP_003023708.1 exodeoxyribonuclease VII small subunit -
  SanJ4211_RS07105 (SanJ4211_1412c) xseA 1412662..1414002 (-) 1341 WP_021001936.1 exodeoxyribonuclease VII large subunit -
  SanJ4211_RS10235 (SanJ4211_1413c) - 1414192..1414560 (-) 369 WP_232043647.1 conjugal transfer protein TraX -
  SanJ4211_RS10240 (SanJ4211_1414c) - 1414579..1414926 (-) 348 WP_232043648.1 TraX family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62269.49 Da        Isoelectric Point: 4.5415

>NTDB_id=136546 SanJ4211_RS07080 WP_021001933.1 1408702..1410360(-) (recN) [Streptococcus anginosus strain J4211]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGASKAEIEGLFAIEQSKALVEIF
EQQGLDMTEELIIRREIFQNGRSVSRINGQMVNLSVLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGADAFFKLKAD
YQQTFDQYRQLRKQVLTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAMLDDEE
FSSLANVRSAMNDMEAIEDYDATYKEIATNLSESYYVLEDVTKRLEDILEDLDFDGGRLLEVESRLDLIYSITRKYGGQV
DDVLAYFEQISKEYALLTGKNLSSDDLNKELKKLEKDLVSLASSLSQARHELAQQLEAEIQQELQDLYMEKANFRVQFTK
GKFSRDGNEHVEFYISTNPGEDYKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLSDEERVEEIAKMLAGENVTQAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=136546 SanJ4211_RS07080 WP_021001933.1 1408702..1410360(-) (recN) [Streptococcus anginosus strain J4211]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGATTTCCCTCAATTTTGAGCAAGGCATGACCGTTTT
GACAGGTGAAACAGGGGCTGGAAAGTCTATTATTATTGATGCTATGAACATGATGCTAGGAAGCCGCGCGACAACAGATG
TGATTCGTCACGGTGCATCAAAAGCAGAGATTGAAGGGCTTTTTGCAATTGAGCAGAGTAAGGCTTTGGTTGAAATTTTT
GAGCAGCAAGGGCTTGATATGACAGAGGAGCTGATTATTCGGCGGGAAATTTTTCAAAATGGGCGTAGTGTCAGTCGTAT
TAATGGTCAAATGGTTAATTTGTCTGTCTTGCGAGCTGTTGGACAGCATTTGGTGGATATTCACGGTCAACACGATCAAG
AAGAACTCATGCGACCGCAGCTGCATATTGCCATGTTGGACGAGTTTGGAGCTGACGCATTTTTCAAGCTCAAAGCTGAT
TATCAACAGACTTTTGACCAGTATCGTCAGTTGCGTAAGCAGGTCTTAACAATTCAAAAGAATCAAGAAGAAAATAAAGC
GCGGATTGACATGCTGGAATATCAAATTGCAGAGATTGAAGCAGCTAATTTAAAAGCAGGTGAAGATTTAGCTTTAAATC
AAGAACGTGATAAGTTGCTCAATCATAAGCAGATTGCGGACACTTTGACCAATGCTTATGCCATGCTGGATGATGAAGAA
TTTTCTAGTTTAGCGAATGTTCGTTCTGCCATGAATGACATGGAAGCTATTGAAGACTATGACGCCACTTACAAAGAAAT
TGCGACCAACCTTTCTGAATCTTACTATGTGTTGGAAGATGTGACAAAGCGTTTGGAGGATATTCTAGAAGACTTGGATT
TTGATGGTGGCCGTCTCTTAGAAGTAGAAAGTCGCCTAGATTTAATCTATAGTATTACTCGCAAATACGGCGGTCAAGTA
GATGATGTCCTAGCTTATTTTGAGCAGATTTCTAAAGAATATGCTCTACTTACTGGGAAAAATCTTTCATCAGATGATTT
GAACAAAGAGCTGAAAAAGCTGGAAAAAGACTTGGTTTCTCTAGCAAGCAGTCTTAGTCAGGCTCGGCACGAATTAGCCC
AGCAGTTAGAAGCAGAGATTCAGCAAGAACTGCAAGACCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAG
GGAAAATTTAGCCGCGATGGGAATGAACACGTTGAATTTTATATTTCGACCAATCCCGGTGAAGATTACAAACCGCTCGT
TAAGGTTGCTTCAGGTGGTGAATTGTCTCGTTTAATGTTGGCAATCAAGTCTGCTTTTTCTCGCAAGGAAGGCAAGACCA
GCATTGTCTTTGATGAAGTAGATACAGGTGTATCGGGACGTGTTGCACAAGCTATTGCTCAAAAGATTCATAAAATTGGC
TCCAATGGACAAGTTCTTGCCATCTCGCACCTACCACAAGTGATTGCCATTGCAGATTATCAATTTTTCATTGAGAAAAT
ATCTGATGAACATTCGACCGTTTCAACTGTTCGCTTGTTATCAGATGAGGAGCGTGTCGAAGAAATTGCCAAAATGTTGG
CGGGTGAAAATGTGACCCAAGCAGCCCTCACGCAGGCTAGAGAGCTCTTGAAAAAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.386

100

0.458

Multiple sequence alignment