Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SanJ4211_RS04790 Genome accession   NZ_CP012805
Coordinates   955884..956954 (+) Length   356 a.a.
NCBI ID   WP_021001685.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 950884..961954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS04765 (SanJ4211_0937c) guaA 951048..952607 (-) 1560 WP_021001682.1 glutamine-hydrolyzing GMP synthase -
  SanJ4211_RS04770 (SanJ4211_0938) - 952749..953447 (+) 699 WP_021001683.1 GntR family transcriptional regulator -
  SanJ4211_RS04775 (SanJ4211_0939) - 953563..953895 (+) 333 WP_003034487.1 putative DNA-binding protein -
  SanJ4211_RS04780 (SanJ4211_0940) ffh 953968..955518 (+) 1551 WP_021001684.1 signal recognition particle protein -
  SanJ4211_RS04790 (SanJ4211_0941) xerS 955884..956954 (+) 1071 WP_021001685.1 tyrosine recombinase XerS Machinery gene
  SanJ4211_RS04795 (SanJ4211_0942c) ucpA 957016..957813 (-) 798 WP_021001686.1 SDR family oxidoreductase UcpA -
  SanJ4211_RS04800 (SanJ4211_0944c) - 958165..959154 (-) 990 WP_057489658.1 lipoate--protein ligase -
  SanJ4211_RS04805 (SanJ4211_0945c) lpdA 959163..960866 (-) 1704 WP_057489659.1 dihydrolipoyl dehydrogenase -
  SanJ4211_RS04810 (SanJ4211_0946c) - 960896..961939 (-) 1044 WP_041784009.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41305.34 Da        Isoelectric Point: 9.3193

>NTDB_id=136532 SanJ4211_RS04790 WP_021001685.1 955884..956954(+) (xerS) [Streptococcus anginosus strain J4211]
MKREILLERIEKLKAIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFHWILDSGIADGSQIAEIPLSVLENMTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAARAENIKQK
LFLGEETEQFLNYIDEEYPKNLSNRALSSFEKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKAYLERYLEVRSKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=136532 SanJ4211_RS04790 WP_021001685.1 955884..956954(+) (xerS) [Streptococcus anginosus strain J4211]
ATGAAACGTGAAATACTGTTAGAAAGAATTGAAAAACTAAAAGCTATCATGCCTTGGTATGTTTTGGAATACTATCAGTC
TAAATTGACTGTTCCATACAGTTTTACAACCTTATATGAATATCTCAAAGAATATGATCGCTTTTTTCATTGGATTTTAG
ACTCTGGAATTGCTGATGGGTCACAGATTGCAGAAATTCCTCTGTCAGTATTGGAAAATATGACTAAAAAAGATATGGAA
GCGTTTATTCTTTACTTACGGGAGCGTCCATTGCTGAATGCCAATACTACACAGAACGGGGTATCGCAAACCACCATTAA
TCGCACTCTTTCTGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGGGAGCCTTATTTCT
ATCGTAATGTCATGAAAAAAGTGTCTACTAAGAAAAAGAGAGAAACTTTAGCTGCGCGCGCTGAAAACATCAAACAAAAA
CTCTTTTTGGGCGAAGAAACTGAACAATTTTTGAATTATATTGATGAAGAATACCCTAAAAATTTATCAAATCGGGCTCT
CTCCTCTTTTGAAAAAAATAAAGAGCGAGATTTGGCAATCATAGCACTGCTTCTTGCGTCTGGTGTTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTAAATCTCAAAATGATGGTCATTGAAGTTACTCGTAAGGGCGGGAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAAGCTTATTTGGAAAGGTACCTGGAGGTTCGCTCTAAACGTTATAAAGCTGAAAAATC
AGACACTGCCCTCTTTTTGACAGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATGCCAGTACTCAAGTTACAGATCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(187-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

88.483

100

0.885

Multiple sequence alignment