Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SanJ4211_RS03315 Genome accession   NZ_CP012805
Coordinates   653801..657073 (+) Length   1090 a.a.
NCBI ID   WP_057489606.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 648801..662073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS03285 (SanJ4211_0631) - 649101..649967 (+) 867 WP_021001499.1 ABC transporter permease -
  SanJ4211_RS03290 (SanJ4211_0632) - 649964..650722 (+) 759 WP_057489602.1 ABC transporter ATP-binding protein -
  SanJ4211_RS03295 (SanJ4211_0633c) - 650738..651079 (-) 342 WP_057489603.1 hypothetical protein -
  SanJ4211_RS03300 (SanJ4211_0634) - 651167..651379 (+) 213 WP_003025304.1 YdbC family protein -
  SanJ4211_RS03305 (SanJ4211_0635) - 651576..652469 (+) 894 WP_057489604.1 ABC transporter ATP-binding protein -
  SanJ4211_RS03310 (SanJ4211_0636) - 652466..653680 (+) 1215 WP_057489605.1 ABC transporter permease -
  SanJ4211_RS03315 (SanJ4211_0637) rexB 653801..657073 (+) 3273 WP_057489606.1 ATP-dependent nuclease subunit B Machinery gene
  SanJ4211_RS03320 (SanJ4211_0638) rexA 657070..660750 (+) 3681 WP_021001503.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125564.63 Da        Isoelectric Point: 5.2285

>NTDB_id=136512 SanJ4211_RS03315 WP_057489606.1 653801..657073(+) (rexB) [Streptococcus anginosus strain J4211]
MKLLYTDIRNPLTKILVKEAERLAQEGKRVFYIAPNSLSFEKERAVLALLENHASFAITVTRFAQMARYFVLNDVQKGEN
IDDIGLSMLFYKVLSEMNEHDLRLYGGIRTDAQFIQQLVELYHELQVAQMSYTDLDYLEEAEKKADLIKIFQVVMYQLNQ
SEFTSDSNIMAFTHHIIAGDVDEELQDLVLVIDGFTRFSAEEAYLIELLHNKGVEIIIGAYASEKAYRASFREGNLYQAS
VDFLRQLAGKFEVKPEYIPASQPDDAFGKISKLLESRYDFSDVDLKLTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVETYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLKQE
ELDLFEQYIRFADVRGMSKFSKEFTHNQQRKFNLVHINQLRKNIVTPLLEFFKSRSQTATGLLQKFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFASVFSASKVKLDDFLTLVQSGMLLSNYRTIPATVDVVTIQSYDLIEPLSSPF
VYAVGLTQDYFPKIAQNKSLLSDEDRLRLNEATDEHSELRIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNI
SPYLLELHEQPIGLPIEVKRSQATSDDIGTYRALLARVIELNQGDIDKERSLTEKEQTFWSVAVRVLRKKLESEGISIPN
VTSSLETETLSTQTLQALYPPHQAFLLSTSALTEFYRNQYAYFLKYVLALQEEMTIHPDARSHGNFLHRVFEKVMQEQSS
EPFDNRLEKAIQETSQEAEFKTLYTENAEALFAHEVLLDTARATGQVLERNELVETIQEEAVFGQEETNVLILSDGRNLQ
IRGKVDRIDRLKIDGSLGVVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQESWMNEEAHAFGAMYLQMTNPLVPLAKTK
SQGDAVKEAMKNLEYKGLFLFEQARQLNGLYDKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFYINPYTENGRSIA
PFVEQYKSITGFEANLHLSSARHLVKLDSHPIGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=136512 SanJ4211_RS03315 WP_057489606.1 653801..657073(+) (rexB) [Streptococcus anginosus strain J4211]
ATGAAATTACTTTATACAGATATTCGCAATCCCTTAACGAAGATTTTGGTGAAAGAAGCAGAACGCTTGGCACAGGAAGG
TAAGCGCGTGTTTTATATTGCACCTAATTCTCTTTCATTTGAAAAGGAGAGAGCTGTTTTGGCTCTTTTAGAAAACCATG
CTTCCTTTGCTATTACAGTGACACGTTTTGCGCAGATGGCACGTTATTTTGTCCTCAATGATGTGCAAAAGGGAGAAAAC
ATAGATGATATTGGGCTTAGCATGCTCTTTTATAAAGTGCTTTCAGAAATGAATGAGCATGATTTGAGGCTGTATGGTGG
CATTCGGACGGATGCACAATTTATTCAGCAATTGGTTGAGCTCTATCATGAACTGCAAGTCGCTCAGATGAGTTATACAG
ACCTAGACTATTTGGAAGAAGCAGAGAAAAAAGCAGATTTAATCAAGATTTTTCAAGTAGTGATGTATCAGCTTAATCAG
AGTGAATTTACTTCTGATTCAAATATCATGGCCTTTACCCATCATATTATAGCAGGTGATGTGGATGAGGAGCTGCAGGA
TTTAGTCTTGGTTATTGATGGGTTTACGCGCTTTTCGGCTGAGGAAGCTTATTTGATCGAGCTTTTGCATAATAAGGGTG
TGGAAATTATCATCGGTGCTTATGCAAGTGAAAAAGCGTATCGTGCAAGTTTTCGAGAGGGCAATCTTTATCAGGCGAGT
GTTGATTTCTTGCGACAGTTAGCAGGTAAATTTGAAGTGAAACCTGAATATATACCAGCAAGCCAGCCAGATGATGCTTT
TGGAAAGATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAAAGTTAACGGAGCAGGATCGATCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAAGAAGAATTAGAATATGTGGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAACGTATCATTTACAGTTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTTTATGGTCATTTAAAGCAAGAA
GAACTAGACTTGTTTGAGCAATATATCCGTTTTGCAGACGTGAGAGGAATGAGTAAGTTTTCTAAAGAATTTACTCATAA
TCAACAACGAAAATTTAATCTAGTTCATATCAATCAATTAAGAAAAAATATAGTCACTCCTCTCTTGGAATTTTTTAAAT
CTCGCAGTCAAACAGCGACAGGCCTGCTTCAAAAATTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGTCATGTTTTGGAACA
ATTTGCCAGTGTCTTTTCAGCCAGCAAAGTCAAGCTAGATGATTTTCTGACTCTGGTGCAGTCAGGAATGCTGTTATCCA
ACTATCGGACTATTCCAGCAACAGTAGATGTCGTGACCATTCAGTCTTATGACTTAATCGAGCCTTTGTCAAGTCCTTTT
GTCTATGCTGTTGGTTTGACCCAAGACTATTTTCCAAAAATTGCGCAAAACAAGAGCCTCTTGTCAGATGAAGACCGATT
ACGATTAAATGAAGCGACTGATGAGCATTCGGAGTTGCGAATTGCTGCTCAGGAAAATCTCCAGAAAAATCGTTTTGTCG
CTTTGTCACTTCTGAATGCTGCAACGGAGAGGTTGGTGCTCTCCACTCCTCAGATTGTCAATGAAATAGAGAACAACATT
TCTCCATATTTGTTAGAATTGCATGAACAACCAATTGGGCTGCCGATTGAAGTGAAGCGTTCGCAGGCAACGAGTGATGA
TATTGGAACTTATCGAGCTCTGCTGGCGAGGGTTATTGAGTTGAATCAAGGTGATATTGATAAAGAGCGCTCTTTGACGG
AGAAAGAACAGACTTTTTGGTCAGTAGCTGTGCGGGTTCTGCGCAAAAAATTGGAAAGCGAAGGTATTTCGATTCCTAAT
GTAACGTCAAGCCTTGAAACAGAAACCTTGTCAACACAGACATTGCAAGCTCTTTATCCGCCTCATCAGGCATTTCTACT
GTCGACTTCAGCTTTGACAGAATTCTACCGCAATCAATATGCTTATTTTTTGAAGTATGTCTTGGCTTTGCAGGAAGAAA
TGACGATTCACCCAGATGCGCGTAGCCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTCATGCAAGAGCAGTCTAGT
GAGCCATTTGATAATCGCCTAGAAAAAGCCATTCAAGAAACCAGTCAGGAGGCAGAATTTAAAACTCTTTATACAGAAAA
TGCAGAAGCCTTGTTTGCTCACGAAGTCTTGCTGGACACAGCGCGTGCGACAGGACAGGTTTTAGAGAGAAATGAATTGG
TAGAAACCATTCAAGAAGAAGCTGTTTTCGGTCAAGAAGAAACAAATGTTCTAATCTTGTCAGACGGACGCAACCTTCAA
ATTCGAGGGAAAGTTGACCGGATTGACCGTTTGAAGATAGATGGCAGTCTAGGCGTTGTTGACTATAAATCAAGCGATAC
GAATTTTGATTTTCAGAAATTTTTCAATGGCTTAAATTCTCAATTACCTACCTATCTAGCAGCTTTGAAACAAGAGTCGT
GGATGAATGAAGAAGCGCATGCTTTTGGTGCTATGTATCTGCAGATGACCAATCCACTTGTGCCTTTAGCCAAGACGAAG
TCGCAAGGCGACGCTGTCAAAGAAGCAATGAAGAACCTAGAATACAAAGGTCTGTTCTTGTTTGAGCAGGCTCGTCAGCT
GAATGGTTTGTATGATAAAAAGAAAGTGAATCTGTTGAGTCAAGAGGAATTGGAGACATTGTTGGCTTATAATGCACTCT
TGTATCGCCGTGCTGCTGAGCAGATTTTGGCAGGGCATTTTTACATCAATCCTTATACGGAAAATGGTAGAAGTATTGCG
CCTTTTGTGGAACAATACAAATCCATTACGGGTTTTGAAGCGAATCTTCACCTCTCTAGCGCCCGCCATTTGGTTAAGTT
AGATAGTCACCCGATAGGTGAAAAGAAGCGTCAAGCATGGATAGAAAAGATGAAGGAGGAGTTAGAGAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.636

100

0.561