Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E1470_RS05245 Genome accession   NZ_CP010344
Coordinates   1088329..1088958 (+) Length   209 a.a.
NCBI ID   WP_000839142.1    Uniprot ID   A0A8S7T410
Organism   Escherichia coli ECC-1470     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083329..1093958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1470_RS05220 (E1470_c09990) ycbZ 1083730..1085490 (-) 1761 WP_000156526.1 Lon protease family protein -
  E1470_RS05225 (E1470_c10000) matP 1085676..1086128 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  E1470_RS05230 (E1470_c10010) ompA 1086204..1087244 (-) 1041 WP_000750416.1 porin OmpA -
  E1470_RS05240 (E1470_c10020) sulA 1087601..1088110 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E1470_RS05245 (E1470_c10030) sxy/tfoX 1088329..1088958 (+) 630 WP_000839142.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E1470_RS05250 (E1470_c10040) yccS 1088921..1091083 (-) 2163 WP_000875023.1 YccS family putative transporter -
  E1470_RS05255 (E1470_c10050) yccF 1091093..1091539 (-) 447 WP_001261235.1 YccF domain-containing protein -
  E1470_RS05260 (E1470_c10060) helD 1091662..1093716 (+) 2055 WP_001349949.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=136472 E1470_RS05245 WP_000839142.1 1088329..1088958(+) (sxy/tfoX) [Escherichia coli ECC-1470]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=136472 E1470_RS05245 WP_000839142.1 1088329..1088958(+) (sxy/tfoX) [Escherichia coli ECC-1470]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment