Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SanJ4211_RS00210 Genome accession   NZ_CP012805
Coordinates   28115..28888 (+) Length   257 a.a.
NCBI ID   WP_021001142.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23115..33888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS00190 (SanJ4211_0017) mreD 23861..24361 (+) 501 WP_021001140.1 rod shape-determining protein MreD -
  SanJ4211_RS00195 (SanJ4211_0018) pcsB 24471..25697 (+) 1227 WP_003027163.1 peptidoglycan hydrolase PcsB -
  SanJ4211_RS00200 (SanJ4211_0019) - 25830..26798 (+) 969 WP_003032055.1 ribose-phosphate diphosphokinase -
  SanJ4211_RS00205 (SanJ4211_0020) - 26950..28137 (+) 1188 WP_057489498.1 pyridoxal phosphate-dependent aminotransferase -
  SanJ4211_RS00210 (SanJ4211_0021) recO 28115..28888 (+) 774 WP_021001142.1 DNA repair protein RecO Machinery gene
  SanJ4211_RS00215 (SanJ4211_0022) plsX 28885..29883 (+) 999 WP_021001143.1 phosphate acyltransferase PlsX -
  SanJ4211_RS00220 (SanJ4211_0023) - 29880..30125 (+) 246 WP_003027168.1 acyl carrier protein -
  SanJ4211_RS00225 (SanJ4211_0024) purC 30283..30990 (+) 708 WP_021001144.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29999.39 Da        Isoelectric Point: 6.0890

>NTDB_id=136466 SanJ4211_RS00210 WP_021001142.1 28115..28888(+) (recO) [Streptococcus anginosus strain J4211]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVVQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFTMAYATYVVALADASIQDNKIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGISLNFHECCFCHRVG
LPFDFSFTYNGVLCSEHYNKDERRSHLDPNIPYLLDQFQAIQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=136466 SanJ4211_RS00210 WP_021001142.1 28115..28888(+) (recO) [Streptococcus anginosus strain J4211]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAACTGGTCAAAATTTT
CACAGAGCAAGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTGTCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTACAATGGCTTATGCAACTTATGTGGTAGCTCTGGCAGACGCCAGTATTCAGGATAATAA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGAATTTCTTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGA
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCTCGGAACATTACAACAAAGACGAGAGACGGAGTCATTT
GGATCCCAACATTCCTTACTTATTAGACCAATTTCAAGCGATTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCAAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATTTTAAAGAATAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747