Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AO055_RS23685 Genome accession   NZ_CP012802
Coordinates   4604045..4605037 (+) Length   330 a.a.
NCBI ID   WP_077889687.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain WS4202     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4599045..4610037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO055_RS23660 (AO055_23630) rbsD 4599169..4599588 (+) 420 WP_001301979.1 D-ribose pyranase -
  AO055_RS23665 (AO055_23635) rbsA 4599596..4601101 (+) 1506 WP_000387782.1 ribose ABC transporter ATP-binding protein RbsA -
  AO055_RS23670 (AO055_23640) rbsC 4601106..4602071 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  AO055_RS23675 (AO055_23645) rbsB 4602096..4602986 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AO055_RS23680 (AO055_23650) rbsK 4603112..4604041 (+) 930 WP_001300603.1 ribokinase -
  AO055_RS23685 (AO055_23655) cytR 4604045..4605037 (+) 993 WP_077889687.1 ribose operon transcriptional repressor RbsR Regulator
  AO055_RS23690 (AO055_23660) mdtD 4605003..4606430 (-) 1428 WP_001280821.1 multidrug transporter subunit MdtD -
  AO055_RS23695 (AO055_23665) yieP 4606453..4607145 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36636.90 Da        Isoelectric Point: 5.4086

>NTDB_id=136446 AO055_RS23685 WP_077889687.1 4604045..4605037(+) (cytR) [Escherichia coli O157:H7 strain WS4202]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRRNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=136446 AO055_RS23685 WP_077889687.1 4604045..4605037(+) (cytR) [Escherichia coli O157:H7 strain WS4202]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGAGGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACGATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

38.138

100

0.385
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment