Detailed information NTG0136439

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: Q425_RS01245
• Genome accession: NZ_CP010323
• Coordinates: 238987..240426 (+)
• Length: 479 a.a.
• NCBI ID: WP_050457416.1
• Uniprot ID: -
• Organism: Bordetella pertussis 137
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 233987..245426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q425_RS01230 (Q425_2460)	-	234870..236123 (+)	1254	WP_010929638.1	amidase	-
Q425_RS01235 (Q425_2470)	leuA	236214..237914 (-)	1701	WP_010929639.1	2-isopropylmalate synthase	-
Q425_RS01240 (Q425_2480)	-	238341..238988 (-)	648	WP_010929640.1	hypothetical protein	-
Q425_RS01245 (Q425_2490)	rpoN/rpoN1	238987..240426 (+)	1440	WP_050457416.1	RNA polymerase factor sigma-54	Machinery gene
Q425_RS01250 (Q425_2500)	-	240519..240821 (+)	303	WP_003815905.1	bacterioferritin-associated ferredoxin	-
Q425_RS01255 (Q425_2510)	-	240849..241727 (-)	879	WP_010929512.1	LysR substrate-binding domain-containing protein	-
Q425_RS01260 (Q425_2520)	-	241835..242763 (+)	929	Protein_248	DMT family transporter	-
Q425_RS01265 (Q425_2530)	-	242994..243944 (-)	951	WP_005012067.1	IS481-like element IS481 family transposase	-
Q425_RS01270 (Q425_2540)	-	244039..244314 (+)	276	Protein_250	porin	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 52334.53 Da
• Isoelectric Point: 4.8120

>NTDB_id=136439 Q425_RS01245 WP_050457416.1 238987..240426(+) (rpoN/rpoN1) [Bordetella pertussis 137]
MQNIVPMTRPALELHPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVLPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAE
VQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVSTDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR

Nucleotide

• Length: 1440 bp

>NTDB_id=136439 Q425_RS01245 WP_050457416.1 238987..240426(+) (rpoN/rpoN1) [Bordetella pertussis 137]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCATCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTTCTTCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGATACCCTGCGCGAACACCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCGCCGCGCGATGCGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACCTGGCTGCCGGCCGAG
GTGCAGGCCGACCTGGACGAGCTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGCGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCATGCGCTGATCCCGCGCCTGGAACCGCGGCCGGGCCGCGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGTACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCCGTCG
TGCCGCGGCTGCATGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGCTGCAACAGGCGCGCTGGATGATACGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCACCCAGGGGCCGGCGGCCATGCGGCCGCTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCGCGCGCGACGACGCAGAAGTACATGCTCACACCGTTCGGTACGCTGGAGCTCAAGCGC
TTCTTTGGCGCGGGCGTGTCCACCGATGGCGGAGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGATGGT
GGCCGACGAGGATCGCGCCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATTGCCC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGGATTGCGCCAGCGACGCTGCGCAAGGCCCACGCCGCGGGTCGTTAG

Domains

Predicted by InterProScan.

• Sigma-54 factor, core binding domain (Sigma54_CBD) (106-303)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

• Sigma-54, DNA binding domain (Sigma54_DBD) (318-473)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.221	100	0.509