Detailed information    

experimental Experimentally validated

Overview

Name   atpB   Type   Unclear
Locus tag   HI_0485 Genome accession   L42023
Coordinates   505478..506266 (-) Length   262 a.a.
NCBI ID   AAC22143.1    Uniprot ID   -
Organism   Haemophilus influenzae Rd KW20     
Function   require for natural transformation   
Unclear

Function

The transformation frequency in an atpB mutantwas, on average, 35% of the wild-type level in the MIV assayand 2.5% of the wild-type level in the transient anaerobiosisassay.


Genomic Context

Location: 500478..511266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HI_0480 - 501663..502532 (-) 870 AAC22138.1 ATP synthase F1, subunit gamma (atpG) -
  HI_0481 atpA 502548..504089 (-) 1542 AAC22139.1 ATP synthase F1, subunit alpha (atpA) Unclear
  HI_0482 - 504102..504635 (-) 534 AAC22140.1 ATP synthase F1, subunit delta (atpH) -
  HI_0483 - 504648..505118 (-) 471 AAC22141.1 ATP synthase F0, subunit b (atpF) -
  HI_0484 - 505168..505422 (-) 255 AAC22142.1 ATP synthase F0, subunit c (atpE) -
  HI_0485 atpB 505478..506266 (-) 789 AAC22143.1 ATP synthase F0, subunit a (atpB) Unclear
  HI_0485.1 - 506303..506677 (-) 375 AAC22145.1 predicted coding region HI0485.1 -
  HI_0486 - 506803..507414 (-) 612 AAC22146.1 glucose-inhibited division protein (gidB) -
  HI_0487 - 507554..507931 (-) 378 AAC22157.1 predicted coding region HI0487 -
  HI_0488 - 508047..508649 (+) 603 AAC22147.1 conserved hypothetical protein -
  HI_0489 - 508649..509122 (+) 474 AAC22148.1 conserved hypothetical protein -
  HI_0491 - 509452..509955 (+) 504 AAC22149.1 conserved hypothetical protein -
  HI_0493 - 510454..510810 (+) 357 AAC22150.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29333.07 Da        Isoelectric Point: 8.2898

>NTDB_id=1364 HI_0485 AAC22143.1 505478..506266(-) (atpB) [Haemophilus influenzae Rd KW20]
MSGQTTSEYISHHLSFLKTGDGFWNVHIDTLFFSILAAVIFLFVFSRVGKKATTGVPGKMQCLVEIVVEWVNGIVKENFH
GPRNVVAPLALTIFCWVFIMNAIDLIPVDFLPQFAGLFGIHYLRAVPTADISATLGMSICVFFLILFYTIKSKGFKGLVK
EYTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYSANMAIAALGIPLHLAWAIFHILVITL
QAFIFMMLTVVYLSIAYNKADH

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1364 HI_0485 AAC22143.1 505478..506266(-) (atpB) [Haemophilus influenzae Rd KW20]
ATGTCTGGACAAACAACATCGGAATACATTAGCCACCATTTATCCTTTCTCAAAACAGGGGATGGATTTTGGAATGTTCA
TATAGATACGTTGTTCTTTTCTATTCTTGCTGCGGTTATTTTCCTATTTGTTTTTTCTCGAGTAGGGAAAAAAGCAACAA
CTGGCGTTCCAGGAAAAATGCAATGCTTAGTTGAAATTGTTGTGGAATGGGTTAATGGAATCGTGAAAGAAAATTTTCAT
GGTCCACGTAACGTAGTTGCGCCACTTGCATTAACAATTTTCTGTTGGGTATTCATCATGAATGCTATCGACTTAATTCC
TGTTGATTTCTTACCTCAATTTGCAGGTTTGTTCGGTATTCATTATCTTCGTGCAGTGCCGACAGCAGATATTAGCGCAA
CTTTGGGTATGTCCATTTGTGTTTTCTTTTTAATTCTTTTTTATACAATAAAATCTAAAGGATTCAAAGGTTTAGTTAAA
GAATATACGCTTCATCCATTCAATCATTGGGCGTTTATTCCTGTTAATTTTATTCTTGAAACGGTGACTTTATTGGCTAA
ACCAATTTCACTTGCCTTCCGTTTATTCGGTAACATGTATGCAGGGGAGTTGATCTTTATTCTTATCGCTGTAATGTATT
CCGCTAATATGGCCATTGCAGCATTAGGGATTCCGTTACATCTTGCTTGGGCTATTTTCCATATTTTGGTTATTACCTTG
CAGGCTTTCATCTTTATGATGTTGACGGTTGTTTATTTAAGTATTGCTTATAACAAAGCAGATCATTAA

Domains

Predicted by InterproScan.

ATP synthase A chain (ATP-synt_A)

(32-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value

References

[1] M L Gwinn et al. (1997) In vitro Tn7 mutagenesis of Haemophilus influenzae Rd and characterization of the role of atpA in transformation. Journal of Bacteriology 179(23):7315-20. [PMID: 9393695]