Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACH32_RS11100 Genome accession   NZ_CP012756
Coordinates   2190891..2191973 (+) Length   360 a.a.
NCBI ID   WP_001807512.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JS395     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2185891..2196973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH32_RS11080 (ACH32_11075) gdpS 2186261..2187331 (-) 1071 WP_000460988.1 GGDEF domain-containing protein GdpS -
  ACH32_RS11085 (ACH32_11080) - 2187649..2188704 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACH32_RS11090 (ACH32_11085) - 2188876..2189517 (-) 642 WP_000192950.1 YigZ family protein -
  ACH32_RS11095 (ACH32_11090) fakB1 2189661..2190527 (+) 867 WP_000686346.1 fatty acid kinase binding subunit FakB1 -
  ACH32_RS11100 (ACH32_11095) comFA 2190891..2191973 (+) 1083 WP_001807512.1 DEAD/DEAH box helicase Machinery gene
  ACH32_RS11105 (ACH32_11100) - 2191966..2192640 (+) 675 WP_060649814.1 ComF family protein -
  ACH32_RS11110 (ACH32_11105) hpf 2192701..2193273 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACH32_RS11115 (ACH32_11110) secA 2193688..2196219 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACH32_RS11120 (ACH32_11115) - 2196261..2196354 (+) 94 Protein_2137 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41983.40 Da        Isoelectric Point: 9.5935

>NTDB_id=136356 ACH32_RS11100 WP_001807512.1 2190891..2191973(+) (comFA) [Staphylococcus aureus strain JS395]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=136356 ACH32_RS11100 WP_001807512.1 2190891..2191973(+) (comFA) [Staphylococcus aureus strain JS395]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACAGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGCTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369