Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACH32_RS04015 Genome accession   NZ_CP012756
Coordinates   749499..749969 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain JS395     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 744499..754969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH32_RS15630 - 744607..744858 (-) 252 WP_001845478.1 hypothetical protein -
  ACH32_RS03995 (ACH32_03990) - 744842..745045 (+) 204 WP_000814511.1 excisionase -
  ACH32_RS04000 (ACH32_03995) - 745127..746344 (+) 1218 WP_001291561.1 tyrosine-type recombinase/integrase -
  ACH32_RS04005 (ACH32_04000) ldmS 746811..748004 (-) 1194 WP_000186240.1 L-aspartate--L-methionine ligase LdmS -
  ACH32_RS04010 (ACH32_04005) - 748004..749188 (-) 1185 WP_001291503.1 M20 family metallopeptidase -
  ACH32_RS04015 (ACH32_04010) luxS 749499..749969 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  ACH32_RS04020 (ACH32_04015) - 750121..750471 (-) 351 WP_001024033.1 membrane protein -
  ACH32_RS04025 (ACH32_04020) - 750485..751786 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  ACH32_RS04030 (ACH32_04025) deoC 752070..752732 (-) 663 WP_001083321.1 deoxyribose-phosphate aldolase -
  ACH32_RS04035 (ACH32_04030) deoD 753047..753757 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  ACH32_RS04040 (ACH32_04035) - 753878..754321 (-) 444 WP_000070865.1 Dps family protein -
  ACH32_RS04045 (ACH32_04040) - 754521..754934 (-) 414 WP_001123306.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=136333 ACH32_RS04015 WP_000164421.1 749499..749969(+) (luxS) [Staphylococcus aureus strain JS395]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=136333 ACH32_RS04015 WP_000164421.1 749499..749969(+) (luxS) [Staphylococcus aureus strain JS395]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCTG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTACTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404